C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | TAR DNA binding protein, isoform CRA_d {ECO:0000313|EMBL:EAW71673.1}; TAR DNA-binding protein 43 {ECO:0000313|Ensembl:ENSP000004 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000620028  |
TARDBP-005 |
ENSG00000277726 |
9606 | + |
1:11024793-11030525  |
processed_transcript |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00082Y | CIL_00082Y_0001 | VISTA | 1:10421182-11021687 |
| CIL_0008S2 | CIL_0008S2_0001 | VISTA | 1:10435049-11039184 |
| CIL_0008RU | CIL_0008RU_0001 | VISTA | 1:10491513-11092116 |
| CIL_0008JG | CIL_0008JG_0001 | VISTA | 1:10565145-11165671 |
| CIL_0008JY | CIL_0008JY_0001 | VISTA | 1:10605072-11206087 |
| CIL_00019T | CIL_00019T_0002 | CGP | 1:10946471-11026420 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| No GO terms available. | ||
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000188380
|
Tardbp-029 | processed_transcript | Mus_musculus | 0 | 750 |
|
ENSMUST00000188488
|
Tardbp-022 | protein_coding | Mus_musculus | 0 | 508 |
|
ENSMUST00000188134
|
Tardbp-024 | nonsense_mediated_decay | Mus_musculus | 0 | 508 |
|
ENSMUST00000105702
|
Tardbp-201 | protein_coding | Mus_musculus | 0 | 459 |
|
ENSMUST00000172073
|
Tardbp-203 | protein_coding | Mus_musculus | 0 | 459 |
|
ENSMUST00000165113
|
Tardbp-202 | protein_coding | Mus_musculus | 0 | 459 |
|
ENSMUST00000084125
|
Tardbp-001 | protein_coding | Mus_musculus | 0 | 459 |
|
ENSMUST00000186729
|
Tardbp-023 | nonsense_mediated_decay | Mus_musculus | 0 | 339 |
|
ENSMUST00000045180
|
Tardbp-002 | nonsense_mediated_decay | Mus_musculus | 2e-33 | 147 |
|
ENSMUST00000052060
|
Masp2-001 | protein_coding | Mus_musculus | 3e-22 | 110 |
