C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAR DNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000240185 TARDBP-001 ENSG00000120948 9606 + 1:11012400-11026420 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000240185
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000240185 1.520±0.00 1.963±0.56 2.862±0.54 1.741±0.00 0.514±0.00 4.388±0.00 1.089±0.00 3.043±0.00 4.490±1.56 6.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082Y CIL_00082Y_0001 VISTA 1:10421182-11021687
CIL_0008S2 CIL_0008S2_0001 VISTA 1:10435049-11039184
CIL_0008RU CIL_0008RU_0001 VISTA 1:10491513-11092116
CIL_0008JG CIL_0008JG_0001 VISTA 1:10565145-11165671
CIL_0008JY CIL_0008JY_0001 VISTA 1:10605072-11206087
CIL_00019T CIL_00019T_0002 CGP 1:10946471-11026420

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003690 IDA double-stranded DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003723 IDA RNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005726 IEA perichromatin fibrils
GO:0005737 IEA cytoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0008219 IEA cell death
GO:0008380 IDA RNA splicing
GO:0016607 IEA nuclear speck
GO:0032024 IEA positive regulation of insulin secretion
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0035061 IEA interchromatin granule
GO:0042802 IPI identical protein binding
GO:0043922 IDA negative regulation by host of viral transcription
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070935 IDA 3'-UTR-mediated mRNA stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084125 Tardbp-001 protein_coding Mus_musculus 0 4649
ENSMUST00000165113 Tardbp-202 protein_coding Mus_musculus 0 2385
ENSMUST00000172073 Tardbp-203 protein_coding Mus_musculus 0 2381
ENSMUST00000105702 Tardbp-201 protein_coding Mus_musculus 0 2255
ENSMUST00000105699 Tardbp-006 protein_coding Mus_musculus 0 1539
ENSMUST00000117876 Gm13886-001 processed_pseudogene Mus_musculus 0 1317
ENSMUST00000190696 Tardbp-011 nonsense_mediated_decay Mus_musculus 0 1277
ENSMUST00000095719 Tardbp-007 protein_coding Mus_musculus 0 1149
ENSMUST00000186711 Tardbp-025 protein_coding Mus_musculus 0 1142
ENSMUST00000045180 Tardbp-002 nonsense_mediated_decay Mus_musculus 0 1138
ENSMUST00000188134 Tardbp-024 nonsense_mediated_decay Mus_musculus 0 1138
ENSMUST00000191450 Tardbp-009 nonsense_mediated_decay Mus_musculus 0 1123
ENSMUST00000105700 Tardbp-003 protein_coding Mus_musculus 0 1118
ENSMUST00000189048 Tardbp-012 protein_coding Mus_musculus 0 1116
ENSMUST00000147391 Tardbp-005 nonsense_mediated_decay Mus_musculus 0 942
ENSMUST00000190630 Tardbp-021 protein_coding Mus_musculus 0 806
ENSMUST00000186947 Tardbp-015 protein_coding Mus_musculus 0 771
ENSMUST00000185824 Tardbp-016 protein_coding Mus_musculus 0 737
ENSMUST00000187937 Tardbp-028 processed_transcript Mus_musculus 0 660
ENSMUST00000189041 Tardbp-026 processed_transcript Mus_musculus 0 649
ENSMUST00000185673 Tardbp-014 protein_coding Mus_musculus 0 623
ENSMUST00000190552 Tardbp-017 nonsense_mediated_decay Mus_musculus 0 595
ENSMUST00000140897 Tardbp-004 nonsense_mediated_decay Mus_musculus 0 508
ENSMUST00000191378 Tardbp-018 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000186317 Tardbp-027 processed_transcript Mus_musculus 0 398
ENSMUST00000187939 Tardbp-019 protein_coding Mus_musculus 0 392
ENSMUST00000190478 Tardbp-013 retained_intron Mus_musculus 0 363
ENSMUST00000188380 Tardbp-029 processed_transcript Mus_musculus 0 340
ENSMUST00000190287 Tardbp-020 nonsense_mediated_decay Mus_musculus 0 283
ENSMUST00000186729 Tardbp-023 nonsense_mediated_decay Mus_musculus 0 267
ENSMUST00000188488 Tardbp-022 protein_coding Mus_musculus 1.99993e-41 176
ENSMUST00000052060 Masp2-001 protein_coding Mus_musculus 0.000000003 69

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