C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | TAR DNA binding protein, isoform CRA_d {ECO:0000313|EMBL:EAW71673.1}; TAR DNA-binding protein 43 {ECO:0000313|Ensembl:ENSP000004 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000614757  |
TARDBP-001 |
ENSG00000277726 |
9606 | + |
1:11012662-11030528  |
nonsense_mediated_decay |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00082Y | CIL_00082Y_0001 | VISTA | 1:10421182-11021687 |
| CIL_0008S2 | CIL_0008S2_0001 | VISTA | 1:10435049-11039184 |
| CIL_0008RU | CIL_0008RU_0001 | VISTA | 1:10491513-11092116 |
| CIL_0008JG | CIL_0008JG_0001 | VISTA | 1:10565145-11165671 |
| CIL_0008JY | CIL_0008JY_0001 | VISTA | 1:10605072-11206087 |
| CIL_00019T | CIL_00019T_0002 | CGP | 1:10946471-11026420 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0003676 | IEA | nucleic acid binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000188134
|
Tardbp-024 | nonsense_mediated_decay | Mus_musculus | 0 | 2283 |
|
ENSMUST00000045180
|
Tardbp-002 | nonsense_mediated_decay | Mus_musculus | 0 | 1781 |
|
ENSMUST00000165113
|
Tardbp-202 | protein_coding | Mus_musculus | 0 | 1354 |
|
ENSMUST00000189048
|
Tardbp-012 | protein_coding | Mus_musculus | 0 | 1332 |
|
ENSMUST00000105699
|
Tardbp-006 | protein_coding | Mus_musculus | 0 | 1297 |
|
ENSMUST00000172073
|
Tardbp-203 | protein_coding | Mus_musculus | 0 | 1271 |
|
ENSMUST00000095719
|
Tardbp-007 | protein_coding | Mus_musculus | 0 | 1249 |
|
ENSMUST00000105702
|
Tardbp-201 | protein_coding | Mus_musculus | 0 | 1138 |
|
ENSMUST00000084125
|
Tardbp-001 | protein_coding | Mus_musculus | 0 | 1138 |
|
ENSMUST00000191450
|
Tardbp-009 | nonsense_mediated_decay | Mus_musculus | 0 | 1123 |
|
ENSMUST00000105700
|
Tardbp-003 | protein_coding | Mus_musculus | 0 | 1116 |
|
ENSMUST00000190552
|
Tardbp-017 | nonsense_mediated_decay | Mus_musculus | 0 | 1003 |
|
ENSMUST00000117876
|
Gm13886-001 | processed_pseudogene | Mus_musculus | 0 | 878 |
|
ENSMUST00000185824
|
Tardbp-016 | protein_coding | Mus_musculus | 0 | 809 |
|
ENSMUST00000186947
|
Tardbp-015 | protein_coding | Mus_musculus | 0 | 771 |
|
ENSMUST00000185673
|
Tardbp-014 | protein_coding | Mus_musculus | 0 | 623 |
|
ENSMUST00000147391
|
Tardbp-005 | nonsense_mediated_decay | Mus_musculus | 0 | 593 |
|
ENSMUST00000190696
|
Tardbp-011 | nonsense_mediated_decay | Mus_musculus | 0 | 566 |
|
ENSMUST00000187937
|
Tardbp-028 | processed_transcript | Mus_musculus | 0 | 518 |
|
ENSMUST00000188488
|
Tardbp-022 | protein_coding | Mus_musculus | 0 | 510 |
|
ENSMUST00000188380
|
Tardbp-029 | processed_transcript | Mus_musculus | 0 | 510 |
|
ENSMUST00000140897
|
Tardbp-004 | nonsense_mediated_decay | Mus_musculus | 0 | 507 |
|
ENSMUST00000191378
|
Tardbp-018 | nonsense_mediated_decay | Mus_musculus | 0 | 499 |
|
ENSMUST00000186729
|
Tardbp-023 | nonsense_mediated_decay | Mus_musculus | 0 | 446 |
|
ENSMUST00000190287
|
Tardbp-020 | nonsense_mediated_decay | Mus_musculus | 0 | 438 |
|
ENSMUST00000187939
|
Tardbp-019 | protein_coding | Mus_musculus | 0 | 390 |
|
ENSMUST00000190478
|
Tardbp-013 | retained_intron | Mus_musculus | 0 | 363 |
|
ENSMUST00000190630
|
Tardbp-021 | protein_coding | Mus_musculus | 0 | 285 |
|
ENSMUST00000186317
|
Tardbp-027 | processed_transcript | Mus_musculus | 0 | 226 |
|
ENSMUST00000186711
|
Tardbp-025 | protein_coding | Mus_musculus | 0 | 222 |
|
ENSMUST00000189041
|
Tardbp-026 | processed_transcript | Mus_musculus | 0 | 222 |
|
ENSMUST00000052060
|
Masp2-001 | protein_coding | Mus_musculus | 7e-22 | 110 |
