C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation elongation factor 1 beta 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000188524 Eef1b2-009 ENSMUSG00000025967 10090 + 1:63177130-63179656 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverOvaryPlacentaTestisENSMUST00000188524
Transcript ID Bladder Brain Liver Ovary Placenta Testis
ENSMUST00000188524 231.775±12.51 122.804±0.00 200.012±45.17 454.803±36.99 401.669±155.92 68.254±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039O CIL_00039O_0002 CGP 1:62958418-63176833
CIL_0001R4 CIL_0001R4_0002 CGP 1:63143596-63180486
CIL_0001R5 CIL_0001R5_0002 CGP 1:63176825-63214543

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000236957 EEF1B2-001 protein_coding Homo_sapiens 0 592
ENST00000392221 EEF1B2-201 protein_coding Homo_sapiens 0 592
ENST00000392222 EEF1B2-003 protein_coding Homo_sapiens 0 592
ENST00000415904 EEF1B2-005 nonsense_mediated_decay Homo_sapiens 1e-30 137
ENST00000429769 EEF1B2-007 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000435123 EEF1B2-009 nonsense_mediated_decay Homo_sapiens 6e-31 137
ENST00000445505 EEF1B2-004 protein_coding Homo_sapiens 0 200
ENST00000445713 AC093106.7-001 processed_pseudogene Homo_sapiens 0 555
ENST00000447718 EEF1B2P3-001 processed_pseudogene Homo_sapiens 0 569
ENST00000455150 EEF1B2-010 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000460760 EEF1B2-008 retained_intron Homo_sapiens 2e-30 137
ENST00000479587 EEF1B2-006 retained_intron Homo_sapiens 4e-30 135
ENST00000482103 EEF1B2-002 retained_intron Homo_sapiens 0 366
ENST00000519625 EEF1B2P2-001 processed_pseudogene Homo_sapiens 0 507

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