C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190155 Cops5-007 ENSMUSG00000025917 10090 - 1:10024843-10035128 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000190155
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000190155 43.042±0.00 10.328±4.59 9.768±1.36 8.629±0.96 10.931±1.35 11.407±1.39 8.119±0.00 30.857±23.67 93.578±8.51 43.164±14.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BC CIL_0003BC_0002 CGP 1:9968624-10038168
CIL_0003BF CIL_0003BF_0002 CGP 1:10024601-10136768

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357849 COPS5-001 protein_coding Homo_sapiens 0 525
ENST00000415778 COPS5P1-001 processed_pseudogene Homo_sapiens 0 392
ENST00000517736 COPS5-010 protein_coding Homo_sapiens 0 525
ENST00000517834 PPP1R42-013 processed_transcript Homo_sapiens 1e-39 167
ENST00000518374 COPS5-004 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000518747 COPS5-006 protein_coding Homo_sapiens 0 525
ENST00000521386 COPS5-003 retained_intron Homo_sapiens 0 525
ENST00000521509 COPS5-002 retained_intron Homo_sapiens 0 525
ENST00000523086 COPS5-009 processed_transcript Homo_sapiens 0 324
ENST00000523890 COPS5-012 nonsense_mediated_decay Homo_sapiens 0 525

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