C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000190175 Sf3b1-004 ENSMUSG00000025982 10090 - 1:54985173-54991115 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000190175
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000190175 12.474±1.26 9.438±1.66 18.709±0.52 21.335±6.10 16.766±3.64 5.850±0.88 8.403±0.73 6.488±3.11 18.356±1.68 19.822±3.67 20.405±0.00 4.641±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X7 CIL_0007X7_0002 VISTA 1:54604981-55208576
CIL_00042O CIL_00042O_0003 CGP 1:54645340-55027481
CIL_00042R CIL_00042R_0003 CGP 1:54985169-55072702

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335508 SF3B1-001 protein_coding Homo_sapiens 0 1404
ENST00000424674 SF3B1-012 protein_coding Homo_sapiens 0 516
ENST00000479532 SF3B1-007 retained_intron Homo_sapiens 0 518

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