C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heparan sulfate (glucosamine) 3-O-sulfotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000002596 HS3ST1-001 ENSG00000002587 9606 - 4:11393150-11429765 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000002596
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000002596 0.069±0.00 0.953±0.00 0.036±0.00 0.279±0.00 0.139±0.00 0.082±0.00 0.168±0.00 0.480±0.39 0.040±0.00 0.682±0.00 0.060±0.00 3.632±2.65 0.264±0.02 0.958±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XI CIL_0001XI_0001 CGP 4:10486395-11429765
CIL_0001XJ CIL_0001XJ_0001 CGP 4:11393150-13484365

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005796 TAS Golgi lumen
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0008146 TAS:IEA sulfotransferase activity
GO:0008467 IEA [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity
GO:0016021 TAS integral component of membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053116 Hs3st1-002 protein_coding Mus_musculus 0 1293
ENSMUST00000117944 Hs3st1-001 protein_coding Mus_musculus 0 1256
ENSMUST00000137142 Hs3st1-003 protein_coding Mus_musculus 0 453
ENSMUST00000152057 Hs3st1-004 protein_coding Mus_musculus 7e-23 115

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