C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000156825 MBD3-002 ENSG00000071655 9606 - 19:1573596-1592801 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderOvaryENST00000156825
Transcript ID Bladder Ovary
ENST00000156825 0.214±0.00 3.994±3.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YO CIL_0003YO_0001 CGP 19:1554669-1592801
CIL_0003Z8 CIL_0003Z8_0001 CGP 19:1573596-1605445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003677 TAS:IEA DNA binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008327 IDA methyl-CpG binding
GO:0016581 NAS NuRD complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000105349 Mbd3-002 protein_coding Mus_musculus 0 961
ENSMUST00000105347 Mbd3-006 protein_coding Mus_musculus 0 846
ENSMUST00000092295 Mbd3-001 protein_coding Mus_musculus 0 846
ENSMUST00000105348 Mbd3-003 protein_coding Mus_musculus 0 645
ENSMUST00000142997 Mbd3-004 protein_coding Mus_musculus 0 603
ENSMUST00000125618 Mbd3-005 processed_transcript Mus_musculus 0 453

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