C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: methyl-CpG binding domain protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105347 Mbd3-006 ENSMUSG00000035478 10090 - 10:80392982-80395719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverOvaryPlacentaTestisENSMUST00000105347
Transcript ID Brain Breast Heart Liver Ovary Placenta Testis
ENSMUST00000105347 38.669±25.46 2.482±0.00 8.272±0.51 15.675±1.64 30.837±13.55 35.552±8.70 30.796±13.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YO CIL_0003YO_0002 CGP 10:80380355-80399550
CIL_0003Z8 CIL_0003Z8_0002 CGP 10:80392539-80406830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IDA chromatin
GO:0000792 IDA heterochromatin
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006346 IDA methylation-dependent chromatin silencing
GO:0009888 IMP tissue development
GO:0016573 IMP histone acetylation
GO:0016581 IPI NuRD complex
GO:0043234 IDA protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000156825 MBD3-002 protein_coding Homo_sapiens 0 846
ENST00000434436 MBD3-001 protein_coding Homo_sapiens 0 846
ENST00000585937 UQCR11-001 nonsense_mediated_decay Homo_sapiens 0 845
ENST00000585967 MBD3-004 protein_coding Homo_sapiens 0 592
ENST00000589064 MBD3-010 processed_transcript Homo_sapiens 0 828
ENST00000590550 MBD3-009 protein_coding Homo_sapiens 0 854
ENST00000590830 MBD3-008 retained_intron Homo_sapiens 0 645
ENST00000592012 MBD3-007 nonsense_mediated_decay Homo_sapiens 0 828
ENST00000592361 MBD3-005 protein_coding Homo_sapiens 0 544

Loading