C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003YO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000181588-ENSG00000071655 CGP 9606 19:1554669-1592801
GeneTranscriptPositionBiotype
ENSG00000071655 (MBD3)
methyl-CpG binding domain protein 3 		ENST00000156825 (MBD3-002) 1573596-1592801 protein_coding
ENST00000434436 (MBD3-001) 1576678-1592708 protein_coding
ENST00000585903 (MBD3-006) 1581108-1584573 nonsense_mediated_decay
ENST00000585967 (MBD3-004) 1581159-1592359 protein_coding
ENST00000589064 (MBD3-010) 1577746-1585333 processed_transcript
ENST00000589901 (MBD3-011) 1578445-1581737 retained_intron
ENST00000590550 (MBD3-009) 1576640-1585530 protein_coding
ENST00000590830 (MBD3-008) 1578012-1584954 retained_intron
ENST00000592012 (MBD3-007) 1576640-1585307 nonsense_mediated_decay
ENST00000592361 (MBD3-005) 1581210-1586362 protein_coding
ENST00000592965 (MBD3-003) 1585055-1592392 protein_coding
ENSG00000181588 (MEX3D)
mex-3 RNA binding family member D 		ENST00000402693 (MEX3D-002) 1554669-1568058 protein_coding
ENST00000605173 (MEX3D-003) 1554672-1567530 protein_coding
ENSG00000239367 (RN7SL477P)
RNA, 7SL, cytoplasmic 477, pseudogene 		ENST00000488440 (RN7SL477P-201) 1570575-1570860 misc_RNA
ENSG00000267059 (UQCR11)
ubiquinol-cytochrome c reductase, complex III subunit XI 		ENST00000585937 (UQCR11-001) 1578339-1605445 nonsense_mediated_decay
CIL_0003YO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000048696-ENSMUSG00000035478 CGP 10090 10:80380355-80399550
GeneTranscriptPositionBiotype
ENSMUSG00000035478 (Mbd3)
methyl-CpG binding domain protein 3 		ENSMUST00000092295 (Mbd3-001) 80392539-80399550 protein_coding
ENSMUST00000105347 (Mbd3-006) 80392982-80395719 protein_coding
ENSMUST00000105348 (Mbd3-003) 80392839-80399422 protein_coding
ENSMUST00000105349 (Mbd3-002) 80392539-80399550 protein_coding
ENSMUST00000125618 (Mbd3-005) 80393895-80395326 processed_transcript
ENSMUST00000142997 (Mbd3-004) 80392539-80395170 protein_coding
ENSMUSG00000048696 (Mex3d)
mex3 homolog D (C. elegans) 		ENSMUST00000062946 (Mex3d-201) 80380357-80387651 protein_coding
ENSMUST00000105350 (Mex3d-001) 80380355-80387659 protein_coding
ENSMUST00000123141 (Mex3d-002) 80380454-80381987 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YO_0001ENSG00000071655ENST00000156825ENST00000434436ENST00000585903ENST00000585967ENST00000589064ENST00000589901ENST00000590550ENST00000590830ENST00000592012ENST00000592361ENST00000592965ENSG00000181588ENST00000402693ENST00000605173ENSG00000239367ENST00000488440ENSG00000267059ENST00000585937CIL_0003YO_0002ENSMUSG00000035478ENSMUST00000092295ENSMUST00000105347ENSMUST00000105348ENSMUST00000105349ENSMUST00000125618ENSMUST00000142997ENSMUSG00000048696ENSMUST00000062946ENSMUST00000105350ENSMUST00000123141
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003YO_0001ENSG00000071655ENST00000156825ENST00000434436ENST00000590830ENST00000592012ENSG00000181588ENST00000402693ENST00000605173ENSG00000239367ENST00000488440ENSG00000267059ENST00000585937CIL_0003YO_0002ENSMUSG00000035478ENSMUST00000092295ENSMUST00000105347ENSMUST00000105349ENSMUST00000125618ENSMUST00000142997ENSMUSG00000048696ENSMUST00000062946ENSMUST00000105350ENSMUST00000123141
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000071655 ENST00000156825 N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.994±3.74 N/A N/A
ENST00000434436 21.704±0.00 29.709±0.00 N/A 11.603±8.90 46.506±0.00 25.443±0.00 N/A 12.354±10.67 12.139±10.93 19.371±0.00 11.262±0.00 31.031±22.36 42.988±17.15 29.017±9.79
ENST00000585903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589901 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590830 N/A N/A 0.923±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592012 11.163±0.00 16.665±0.00 0.347±0.00 N/A 0.973±0.00 N/A N/A N/A N/A N/A N/A 1.271±0.00 N/A 8.928±0.00
ENST00000592361 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000181588 ENST00000402693 10.353±0.00 1.935±0.00 0.273±0.00 2.191±1.65 3.619±3.10 3.264±2.67 1.019±0.96 1.560±0.00 1.644±0.56 4.154±3.76 0.564±0.34 5.457±5.12 5.021±2.11 9.536±3.90
ENST00000605173 N/A N/A 0.279±0.00 N/A 0.331±0.00 N/A 0.217±0.09 0.755±0.71 N/A 0.247±0.00 0.311±0.00 5.715±0.52 10.504±2.49 8.097±4.47
ENSG00000239367 ENST00000488440 1.430±0.00 1.994±0.00 N/A 1.738±0.00 1.235±0.00 0.887±0.00 0.295±0.00 1.439±0.00 0.357±0.00 0.156±0.00 N/A 0.698±0.00 N/A 0.782±0.00
ENSG00000267059 ENST00000585937 N/A N/A 0.641±0.00 N/A 2.576±0.00 4.274±0.00 2.298±0.00 N/A 1.478±0.00 1.659±0.00 N/A N/A 35.688±0.00 14.409±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000035478 ENSMUST00000092295 10.633±1.74 16.496±3.16 9.671±2.98 14.138±1.42 11.965±0.67 8.433±2.12 7.241±1.55 10.455±2.73 9.399±3.16 8.391±1.43 20.554±4.56 13.553±3.58 11.026±2.70 10.365±1.79
ENSMUST00000105347 N/A N/A N/A 38.669±25.46 2.482±0.00 N/A 8.272±0.51 N/A 15.675±1.64 N/A N/A 30.837±13.55 35.552±8.70 30.796±13.24
ENSMUST00000105348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000105349 38.700±13.12 26.560±7.12 25.048±6.69 60.361±8.24 28.698±10.44 22.852±3.23 17.584±3.63 39.061±3.91 23.421±11.02 24.846±8.07 23.181±4.66 34.915±11.75 28.075±8.44 33.949±4.47
ENSMUST00000125618 N/A N/A N/A 66.780±0.00 N/A N/A N/A N/A N/A N/A N/A 83.535±0.00 94.760±54.41 68.686±0.00
ENSMUST00000142997 14.935±3.07 18.535±1.70 10.948±2.21 27.443±5.37 15.680±6.56 17.076±1.78 7.384±1.73 11.967±1.35 9.558±3.24 15.048±0.42 9.198±0.00 30.603±8.30 21.782±12.90 7.656±0.00
ENSMUSG00000048696 ENSMUST00000062946 6.112±3.04 9.218±1.99 4.063±2.24 17.926±13.13 3.584±2.08 3.801±1.02 2.181±0.60 2.419±0.20 1.185±0.75 8.471±0.57 1.018±0.29 12.134±6.84 4.137±0.77 N/A
ENSMUST00000105350 N/A N/A 1.598±0.00 N/A 0.040±0.00 N/A N/A N/A 0.659±0.28 N/A N/A N/A N/A N/A
ENSMUST00000123141 4.310±3.01 10.358±0.80 1.539±0.00 N/A 5.399±2.77 4.080±0.58 1.239±0.31 1.917±0.68 0.535±0.25 7.330±1.27 0.699±0.33 11.373±3.45 0.765±0.00 88.988±22.58

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