C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prolyl 4-hydroxylase, alpha polypeptide II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000166534 P4HA2-003 ENSG00000072682 9606 - 5:132192610-132227857 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000166534
Transcript ID Adipose Bladder Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000166534 3.400±0.00 2.971±0.00 1.066±0.13 3.876±0.20 2.446±1.25 3.453±0.04 5.467±1.51 0.759±0.00 4.898±2.38 4.424±0.00 5.111±1.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093D CIL_00093D_0001 VISTA 5:131965137-132566411
CIL_0007RF CIL_0007RF_0001 VISTA 5:131967147-132570227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004656 IEA procollagen-proline 4-dioxygenase activity
GO:0005506 IEA iron ion binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IDA:IEA endoplasmic reticulum
GO:0009055 TAS electron carrier activity
GO:0016491 IEA oxidoreductase activity
GO:0016702 IEA oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031418 IEA L-ascorbic acid binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000019050 P4ha2-002 protein_coding Mus_musculus 0 1834
ENSMUST00000174616 P4ha2-016 protein_coding Mus_musculus 0 1718
ENSMUST00000093107 P4ha2-001 protein_coding Mus_musculus 0 1718
ENSMUST00000125651 P4ha2-003 retained_intron Mus_musculus 0 1452
ENSMUST00000141258 P4ha2-007 nonsense_mediated_decay Mus_musculus 0 1003
ENSMUST00000138477 P4ha2-015 protein_coding Mus_musculus 0 540
ENSMUST00000151218 P4ha2-009 protein_coding Mus_musculus 0 435
ENSMUST00000135653 P4ha2-006 protein_coding Mus_musculus 0 381
ENSMUST00000126840 P4ha2-013 protein_coding Mus_musculus 0 381
ENSMUST00000135596 P4ha2-011 retained_intron Mus_musculus 0 381
ENSMUST00000139315 P4ha2-004 retained_intron Mus_musculus 0 316
ENSMUST00000125132 P4ha2-005 nonsense_mediated_decay Mus_musculus 0 296
ENSMUST00000129499 P4ha2-010 protein_coding Mus_musculus 0.000000000002 79

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