C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000167218 PDCD2-009 ENSG00000071994 9606 - 6:170577436-170584645 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000167218
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000167218 5.480±0.00 3.137±0.00 4.756±0.00 5.992±2.24 3.004±1.37 7.470±0.27 6.889±0.00 6.188±0.00 7.062±2.57 22.617±0.00 6.922±1.75 11.214±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0001 VISTA 6:170138007-170739776
CIL_00018F CIL_00018F_0001 CGP 6:170554302-170584692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125709 Pdcd2-005 retained_intron Mus_musculus 0 348
ENSMUST00000054450 Pdcd2-001 protein_coding Mus_musculus 0 348
ENSMUST00000162505 Tbp-001 protein_coding Mus_musculus 0 198

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