C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell growth regulator with ring finger domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068532 Cgrrf1-001 ENSMUSG00000055128 10090 + 14:46832134-46854193 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068532
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068532 12.525±3.21 11.809±3.70 21.050±2.55 3.519±0.91 11.410±1.49 12.412±3.75 8.938±0.46 17.141±3.11 13.529±4.62 15.540±4.79 26.123±1.16 7.971±2.56 10.602±4.66 32.598±7.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KQ CIL_0008KQ_0002 VISTA 14:46305651-46906520
CIL_00090Z CIL_00090Z_0002 VISTA 14:46310670-46911777
CIL_0000HK CIL_0000HK_0002 CGP 14:46808149-46854193
CIL_0004OT CIL_0004OT_0002 CGP 14:46832134-47105817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0007050 IEA cell cycle arrest
GO:0008270 IEA zinc ion binding
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216420 CGRRF1-001 protein_coding Homo_sapiens 0 992
ENST00000554791 CGRRF1-009 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000556216 CGRRF1-002 retained_intron Homo_sapiens 0 592
ENST00000557184 CGRRF1-008 processed_transcript Homo_sapiens 0 521
ENST00000557317 CGRRF1-004 protein_coding Homo_sapiens 0 348
ENST00000557429 CGRRF1-003 retained_intron Homo_sapiens 0 322
ENST00000557512 CGRRF1-007 processed_transcript Homo_sapiens 0 765
ENST00000557755 CGRRF1-006 nonsense_mediated_decay Homo_sapiens 0 529

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