C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U6 snRNA biogenesis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000219281 USB1-001 ENSG00000103005 9606 + 16:58001373-58021618 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000219281
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000219281 13.402±0.00 13.475±0.00 8.652±0.00 13.011±0.00 6.299±5.71 2.894±2.75 10.184±0.00 7.108±0.00 11.637±0.00 4.733±0.00 12.618±4.78 13.285±0.55 12.258±1.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_00052C CIL_00052C_0002 CGP 16:57994668-58021618
CIL_0004RY CIL_0004RY_0001 CGP 16:57999546-58046901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 IDA 3'-5'-exoribonuclease activity
GO:0004518 IEA nuclease activity
GO:0005634 IEA:IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA:IMP RNA splicing
GO:0034477 IEA:IMP U6 snRNA 3'-end processing
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0090503 IDA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034245 Usb1-001 protein_coding Mus_musculus 0 774
ENSMUST00000145060 Usb1-003 retained_intron Mus_musculus 0 560

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