C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000231461 ST8SIA4-001 ENSG00000113532 9606 - 5:100806935-100903266 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000231461
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000231461 3.318±0.00 2.350±0.00 0.504±0.00 1.131±0.47 2.168±0.20 0.931±0.28 0.667±0.14 0.601±0.22 0.900±0.63 3.415±0.75 0.170±0.15 0.585±0.26 2.335±0.70 0.383±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z8 CIL_0004Z8_0001 CGP 5:100535305-100903266
CIL_0004ZB CIL_0004ZB_0001 CGP 5:100806935-102296549

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001574 IDA ganglioside biosynthetic process
GO:0003828 IDA alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity
GO:0006464 TAS cellular protein modification process
GO:0006486 IDA:IEA protein glycosylation
GO:0006491 IDA N-glycan processing
GO:0007399 TAS nervous system development
GO:0007411 TAS axon guidance
GO:0008373 IEA sialyltransferase activity
GO:0009311 IDA oligosaccharide metabolic process
GO:0030173 IEA integral component of Golgi membrane
GO:0033691 IC sialic acid binding
GO:0097503 IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043336 St8sia4-001 protein_coding Mus_musculus 0 2146
ENSMUST00000189556 St8sia4-004 protein_coding Mus_musculus 0 1339
ENSMUST00000187936 St8sia4-002 retained_intron Mus_musculus 0 556
ENSMUST00000186853 St8sia4-003 retained_intron Mus_musculus 0 420
ENSDART00000013082 st8sia2-001 protein_coding Danio_rerio 1e-23 117

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