C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L22
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000234875 RPL22-001 ENSG00000116251 9606 - 1:6185020-6199612 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000234875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000234875 101.213±0.00 105.689±0.00 18.942±0.00 43.981±14.20 62.732±27.53 89.215±58.28 23.369±13.23 49.495±22.45 33.645±9.16 52.535±26.89 40.984±18.18 164.048±63.39 75.703±6.66 57.574±27.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019L CIL_00019L_0002 CGP 1:6181269-6221299

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008201 IEA heparin binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 IDA ribonucleoprotein complex
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0046632 IEA alpha-beta T cell differentiation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188151 Rpl22-201 protein_coding Mus_musculus 0 577
ENSMUST00000139685 Rpl22-002 protein_coding Mus_musculus 0 577
ENSMUST00000142735 Rpl22-003 processed_transcript Mus_musculus 0 529
ENSMUST00000103191 Rpl22-001 protein_coding Mus_musculus 0 523
ENSMUST00000121451 Gm12005-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000118652 Rpl22-ps1-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000118297 Gm13196-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000180176 Gm9457-201 processed_pseudogene Mus_musculus 0 331
ENSMUST00000150485 Rpl22-006 processed_transcript Mus_musculus 0 311
ENSMUST00000127659 Rpl22-005 processed_transcript Mus_musculus 0 285
ENSMUST00000156445 Rpl22-007 processed_transcript Mus_musculus 0 276
ENSMUST00000126519 Rpl22-004 processed_transcript Mus_musculus 1.4013e-45 189

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