C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type VIII, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108908 Scn8a-203 ENSMUSG00000023033 10090 + 15:100955398-101045929 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverMuscleOvaryENSMUST00000108908
Transcript ID Adrenal Brain Colon Heart Kidney Liver Muscle Ovary
ENSMUST00000108908 0.147±0.00 5.674±0.00 0.041±0.00 0.014±0.01 0.037±0.00 0.021±0.01 0.010±0.00 0.067±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JW CIL_0006JW_0002 CGP 15:100761747-101045929

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IEA voltage-gated sodium channel activity
GO:0005886 IBA plasma membrane
GO:0007517 IMP muscle organ development
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0007628 IMP adult walking behavior
GO:0008344 IMP adult locomotory behavior
GO:0009636 IDA response to toxic substance
GO:0016020 IDA membrane
GO:0019228 IBA neuronal action potential
GO:0030425 IDA dendrite
GO:0034706 IPI sodium channel complex
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0043025 IDA neuronal cell body
GO:0050905 IMP neuromuscular process
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 2440
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 2440
ENSDART00000097722 SCN11A-201 protein_coding Danio_rerio 0 710
ENSDART00000090994 scn1lab-201 protein_coding Danio_rerio 0 675
ENSDART00000151247 scn1lab-001 protein_coding Danio_rerio 0 675
ENSDART00000106534 scn4aa-001 protein_coding Danio_rerio 0 542
ENSDART00000022382 SCN3A-202 protein_coding Danio_rerio 0 475
ENSDART00000104004 scn4ab-201 protein_coding Danio_rerio 0 438
ENSDART00000044157 scn4ab-001 protein_coding Danio_rerio 0 438
ENSDART00000011718 scn1a-201 protein_coding Danio_rerio 0 351
ENSDART00000090979 scn1a-202 protein_coding Danio_rerio 0 351
ENST00000209875 CBX5-002 protein_coding Homo_sapiens 1e-22 115
ENST00000239461 PRRX1-002 protein_coding Homo_sapiens 6e-21 108
ENST00000263563 PALD1-001 protein_coding Homo_sapiens 1e-18 100
ENST00000265272 JAKMIP2-001 protein_coding Homo_sapiens 0.0000000000005 82
ENST00000282344 USP12-001 protein_coding Homo_sapiens 4e-18 99
ENST00000283254 SCN3A-001 protein_coding Homo_sapiens 0 1160
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 1195
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 782
ENST00000303395 SCN1A-001 protein_coding Homo_sapiens 0 414
ENST00000354534 SCN8A-001 protein_coding Homo_sapiens 0 5498
ENST00000355133 SCN8A-005 protein_coding Homo_sapiens 0 2555
ENST00000360093 SCN3A-201 protein_coding Homo_sapiens 0 1160
ENST00000375405 SCN1A-002 protein_coding Homo_sapiens 0 414
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 1195
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 1195
ENST00000396526 SNX6-001 protein_coding Homo_sapiens 0.0000001 64
ENST00000409050 SCN1A-003 protein_coding Homo_sapiens 0 414
ENST00000409101 SCN3A-002 protein_coding Homo_sapiens 0 1160
ENST00000409168 SHISA6-002 protein_coding Homo_sapiens 0.00004 57
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 782
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 782
ENST00000423058 SCN1A-201 protein_coding Homo_sapiens 0 414
ENST00000424833 SCN2A-003 protein_coding Homo_sapiens 0 422
ENST00000432116 SHISA6-003 protein_coding Homo_sapiens 0.00004 57
ENST00000435607 SCN4A-201 protein_coding Homo_sapiens 0 1402
ENST00000440431 SCN3A-004 protein_coding Homo_sapiens 0 584
ENST00000441885 SHISA6-001 protein_coding Homo_sapiens 0.00004 57
ENST00000452182 SCN9A-003 protein_coding Homo_sapiens 0 320
ENST00000454569 SCN9A-002 protein_coding Homo_sapiens 0 320
ENST00000465043 SCN3A-007 processed_transcript Homo_sapiens 2e-36 156
ENST00000480032 SCN2A-005 retained_intron Homo_sapiens 0 422
ENST00000486878 SCN2A-004 retained_intron Homo_sapiens 0 274
ENST00000507386 JAKMIP2-002 protein_coding Homo_sapiens 0.0000000000005 82
ENST00000543965 PRSS27-005 retained_intron Homo_sapiens 0.0000002 62
ENST00000545061 SCN8A-201 protein_coding Homo_sapiens 0 2946
ENST00000548086 SCN8A-006 processed_transcript Homo_sapiens 0 311
ENST00000550891 SCN8A-003 protein_coding Homo_sapiens 0 1338
ENST00000551216 SCN8A-004 protein_coding Homo_sapiens 0 1077
ENST00000558207 ACAN-001 protein_coding Homo_sapiens 0.000002 60
ENST00000578147 SCN4A-001 protein_coding Homo_sapiens 0 1391
ENST00000584310 SCN4A-003 retained_intron Homo_sapiens 0 207
ENST00000599343 SCN8A-202 protein_coding Homo_sapiens 0 5498
ENST00000616793 JAKMIP2-201 protein_coding Homo_sapiens 0.0000000000008 82

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