C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000242310 TAF1L-001 ENSG00000122728 9606 - 9:32629454-32635669 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000242310
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000242310 0.013±0.00 0.027±0.00 0.023±0.02 0.030±0.00 0.006±0.00 0.004±0.00 0.011±0.00 0.004±0.00 0.005±0.00 0.008±0.00 0.006±0.00 0.003±0.00 0.866±0.36

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004402 ISS histone acetyltransferase activity
GO:0004674 ISS protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005669 IEA transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006468 ISS protein phosphorylation
GO:0007140 IEP male meiosis
GO:0016573 ISS histone acetylation
GO:0017025 IPI TBP-class protein binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0070577 IDA lysine-acetylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143908 Taf1-005 nonsense_mediated_decay Mus_musculus 0 6874
ENSMUST00000118878 Taf1-001 protein_coding Mus_musculus 0 5742
ENSMUST00000101341 Taf1-201 protein_coding Mus_musculus 0 4732
ENSMUST00000129487 Taf1-003 retained_intron Mus_musculus 0 2935
ENSMUST00000149274 Taf1-002 protein_coding Mus_musculus 0 2492
ENSDART00000130225 taf1-202 protein_coding Danio_rerio 0 1838
ENSDART00000051196 taf1-001 protein_coding Danio_rerio 0 761
ENSMUST00000140470 Taf1-004 processed_transcript Mus_musculus 0 496
ENSMUST00000090024 Ccser2-001 protein_coding Mus_musculus 0.00003 57
ENSMUST00000067700 Ccser2-002 protein_coding Mus_musculus 0.00003 57

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