C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000243056 HOXC13-001 ENSG00000123364 9606 + 12:53938765-53946544 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyOvaryPlacentaTestisENST00000243056
Transcript ID Adipose Adrenal Breast Kidney Ovary Placenta Testis
ENST00000243056 0.206±0.00 0.696±0.00 0.271±0.00 0.077±0.00 0.913±0.40 0.216±0.12 0.549±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_00033H CIL_00033H_0003 CGP 12:53708517-53946544
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TP CIL_0002TP_0002 CGP 12:53938765-53958956

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001942 IEA hair follicle development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009653 TAS anatomical structure morphogenesis
GO:0009952 IEA anterior/posterior pattern specification
GO:0035878 IEA nail development
GO:0043565 IEA sequence-specific DNA binding
GO:0043587 IEA tongue morphogenesis
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001700 Hoxc13-001 protein_coding Mus_musculus 0 1609

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