C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C13
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001700 Hoxc13-001 ENSMUSG00000001655 10090 + 15:102921103-102928814 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastMuscleOvaryPlacentaTestisENSMUST00000001700
Transcript ID Bladder Brain Breast Muscle Ovary Placenta Testis
ENSMUST00000001700 0.061±0.01 0.037±0.01 0.048±0.00 0.039±0.03 0.022±0.00 0.234±0.15 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00033H CIL_00033H_0004 CGP 15:102706779-102928814
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TP CIL_0002TP_0003 CGP 15:102921103-102938609

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001942 IMP hair follicle development
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0009653 IMP anatomical structure morphogenesis
GO:0009952 IMP anterior/posterior pattern specification
GO:0035878 IMP nail development
GO:0043565 IEA sequence-specific DNA binding
GO:0043587 IMP tongue morphogenesis
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243056 HOXC13-001 protein_coding Homo_sapiens 0 1609

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