C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 114
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000244061 RNF114-001 ENSG00000124226 9606 + 20:49936348-49953892 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000244061
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000244061 11.277±0.00 16.951±0.00 3.390±0.00 8.464±4.07 8.340±0.01 10.855±3.45 5.942±3.96 11.147±7.05 7.762±2.78 10.813±5.46 8.051±4.85 13.294±6.95 17.100±8.90 17.326±5.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0001 VISTA 20:49375075-49977641
CIL_00087E CIL_00087E_0001 VISTA 20:49719805-50323644
CIL_00027D CIL_00027D_0001 CGP 20:49903391-49953892
CIL_0006FM CIL_0006FM_0001 CGP 20:49936336-49988886

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030154 IEA cell differentiation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078050 Rnf114-001 protein_coding Mus_musculus 0 861
ENSMUST00000109214 Rnf114-002 protein_coding Mus_musculus 0 861
ENSMUST00000127939 Rnf114-003 nonsense_mediated_decay Mus_musculus 0 496

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