C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spalt-like transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000251020 SALL1-001 ENSG00000103449 9606 - 16:51135975-51151275 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000251020
Transcript ID Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000251020 3.887±2.32 0.059±0.00 0.122±0.00 12.389±9.88 7.509±0.00 0.912±0.77 0.786±0.08 1.250±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0001 UCNEbase 16:50459337-51906374
CIL_00085B CIL_00085B_0001 VISTA 16:50535781-51137187
CIL_00090J CIL_00090J_0001 VISTA 16:50540952-51141798
CIL_00090K CIL_00090K_0001 VISTA 16:50643117-51244272
CIL_00090L CIL_00090L_0001 VISTA 16:50648118-51248778
CIL_00090M CIL_00090M_0001 VISTA 16:50676779-51277697
CIL_00090N CIL_00090N_0001 VISTA 16:50708342-51309204
CIL_0008AU CIL_0008AU_0001 VISTA 16:50722400-51323681
CIL_00077S CIL_00077S_0001 CGP 16:50742050-51151367
CIL_0008AT CIL_0008AT_0001 VISTA 16:50772237-51373198
CIL_0008AL CIL_0008AL_0001 VISTA 16:50795296-51396395
CIL_0007ZD CIL_0007ZD_0001 VISTA 16:50810409-51413005
CIL_0007WV CIL_0007WV_0001 VISTA 16:50813101-51414731
CIL_0008AK CIL_0008AK_0001 VISTA 16:50897210-51498451
CIL_0008AN CIL_0008AN_0001 VISTA 16:51055384-51656808

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0001657 ISS ureteric bud development
GO:0001658 ISS branching involved in ureteric bud morphogenesis
GO:0001822 IMP kidney development
GO:0001843 IEA neural tube closure
GO:0003281 ISS ventricular septum development
GO:0003337 IEP mesenchymal to epithelial transition involved in metanephros morphogenesis
GO:0003677 NAS DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0004407 ISS histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007507 IMP heart development
GO:0008013 IDA beta-catenin binding
GO:0008406 IEP gonad development
GO:0010369 IDA chromocenter
GO:0016575 ISS histone deacetylation
GO:0016581 ISS NuRD complex
GO:0021553 ISS olfactory nerve development
GO:0021772 IEA olfactory bulb development
GO:0021889 ISS olfactory bulb interneuron differentiation
GO:0021915 IEA neural tube development
GO:0021983 IEP pituitary gland development
GO:0030177 IDA positive regulation of Wnt signaling pathway
GO:0030325 IEP adrenal gland development
GO:0031129 ISS inductive cell-cell signaling
GO:0035136 IEA forelimb morphogenesis
GO:0035137 IEA hindlimb morphogenesis
GO:0042473 IMP outer ear morphogenesis
GO:0042733 IMP embryonic digit morphogenesis
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045879 IEA negative regulation of smoothened signaling pathway
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048566 IMP embryonic digestive tract development
GO:0060173 IMP limb development
GO:0061034 IMP olfactory bulb mitral cell layer development
GO:0072073 ISS kidney epithelium development
GO:0072092 ISS ureteric bud invasion
GO:2000177 IEA regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034090 Sall1-201 protein_coding Mus_musculus 0 5210
ENSMUST00000057950 Sall3-201 protein_coding Mus_musculus 0 300
ENSDART00000111842 sall1a-001 protein_coding Danio_rerio 0 196
ENSDART00000106246 CABZ01006835.1-201 protein_coding Danio_rerio 0.00009 55
ENSDART00000130639 FP074874.1-201 protein_coding Danio_rerio 0.00009 55
ENSDART00000133285 si:dkey-15h8.16-005 retained_intron Danio_rerio 0.00009 55
ENSDART00000144888 si:dkey-15h8.16-003 processed_transcript Danio_rerio 0.00009 55
ENSDART00000139025 si:dkey-15h8.16-006 processed_transcript Danio_rerio 0.00009 55
ENSDART00000133211 si:dkey-15h8.16-001 protein_coding Danio_rerio 0.00009 55
ENSMUST00000075263 Zfp26-004 retained_intron Mus_musculus 0.0003 53
ENSMUST00000098970 Zfp26-002 retained_intron Mus_musculus 0.0003 53
ENSMUST00000159569 Zfp26-001 protein_coding Mus_musculus 0.0003 53
ENSDART00000090292 ctnnd2b-001 protein_coding Danio_rerio 0.0004 53

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