C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sal-like 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034090 Sall1-201 ENSMUSG00000031665 10090 - 8:89027248-89044162 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034090
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034090 3.827±3.96 0.011±0.00 0.013±0.00 4.270±2.87 0.034±0.02 2.007±0.46 0.332±0.02 5.109±3.53 4.386±3.89 0.174±0.06 0.021±0.01 4.387±1.88 3.608±0.90 0.179±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090I CIL_00090I_0002 VISTA 8:88457981-89059109
CIL_00085B CIL_00085B_0002 VISTA 8:88474689-89076074
CIL_00090J CIL_00090J_0002 VISTA 8:88479183-89079972
CIL_00090K CIL_00090K_0002 VISTA 8:88577161-89178261
CIL_00090L CIL_00090L_0002 VISTA 8:88581293-89181923
CIL_00090M CIL_00090M_0002 VISTA 8:88602694-89203557
CIL_00090N CIL_00090N_0002 VISTA 8:88624827-89225618
CIL_0008AU CIL_0008AU_0002 VISTA 8:88639020-89240224
CIL_0008AT CIL_0008AT_0002 VISTA 8:88673175-89274114
CIL_0008AL CIL_0008AL_0002 VISTA 8:88691555-89292644
CIL_00077S CIL_00077S_0002 CGP 8:88697028-89044162
CIL_0007ZD CIL_0007ZD_0002 VISTA 8:88702204-89304697
CIL_0007WV CIL_0007WV_0002 VISTA 8:88705819-89307424
CIL_0008AK CIL_0008AK_0002 VISTA 8:88786387-89387574
CIL_0008AN CIL_0008AN_0002 VISTA 8:88940947-89542638
CIL_0007YA CIL_0007YA_0002 VISTA 8:89023884-89625178

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0001657 IMP ureteric bud development
GO:0001822 IEA kidney development
GO:0001843 IGI neural tube closure
GO:0003281 IGI ventricular septum development
GO:0003337 IEA mesenchymal to epithelial transition involved in metanephros morphogenesis
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0007507 IEA heart development
GO:0008013 IEA beta-catenin binding
GO:0008406 IEA gonad development
GO:0010369 IEA chromocenter
GO:0016581 IDA NuRD complex
GO:0021553 IMP olfactory nerve development
GO:0021772 IMP olfactory bulb development
GO:0021915 IGI neural tube development
GO:0021983 IEA pituitary gland development
GO:0030177 IEA positive regulation of Wnt signaling pathway
GO:0030325 IEA adrenal gland development
GO:0031129 IMP inductive cell-cell signaling
GO:0035136 IGI forelimb morphogenesis
GO:0035137 IGI hindlimb morphogenesis
GO:0042473 IEA outer ear morphogenesis
GO:0042733 IEA embryonic digit morphogenesis
GO:0045666 IMP positive regulation of neuron differentiation
GO:0045879 IGI negative regulation of smoothened signaling pathway
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048566 IEA embryonic digestive tract development
GO:0060173 IEA limb development
GO:0061034 IEA olfactory bulb mitral cell layer development
GO:0072092 IMP ureteric bud invasion
GO:2000177 IMP regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065331 sall4-201 protein_coding Danio_rerio 1e-38 167
ENSDART00000130228 CR628395.2-201 protein_coding Danio_rerio 0.000007 58
ENST00000251020 SALL1-001 protein_coding Homo_sapiens 0 5210
ENST00000292530 ZNF333-001 protein_coding Homo_sapiens 0.0000005 62
ENST00000438101 SALL1P1-001 processed_pseudogene Homo_sapiens 0 3118
ENST00000440970 SALL1-201 protein_coding Homo_sapiens 0 5040
ENST00000536229 SALL3-006 protein_coding Homo_sapiens 0 291
ENST00000537592 SALL3-001 protein_coding Homo_sapiens 0 291
ENST00000562674 SALL1-005 processed_transcript Homo_sapiens 4.99983e-42 174
ENST00000566102 SALL1-002 protein_coding Homo_sapiens 0 562
ENST00000570206 SALL1-003 protein_coding Homo_sapiens 0 4268
ENST00000572106 SALL3-002 protein_coding Homo_sapiens 0 285
ENST00000575389 SALL3-002 protein_coding Homo_sapiens 0 291
ENST00000576809 SALL3-001 protein_coding Homo_sapiens 0 285
ENST00000598161 ZNF333-007 nonsense_mediated_decay Homo_sapiens 0.0000005 62
ENST00000612458 SALL3-203 protein_coding Homo_sapiens 0 291
ENST00000614625 SALL3-202 protein_coding Homo_sapiens 0 285
ENST00000614883 SALL3-204 protein_coding Homo_sapiens 0 291
ENST00000616649 SALL3-201 protein_coding Homo_sapiens 0 291

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