C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000251722 USP40-001 ENSG00000085982 9606 - 2:233475526-233566782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000251722
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000251722 2.883±0.00 2.221±0.00 1.237±0.00 0.802±0.23 3.224±0.00 0.632±0.00 1.483±1.05 3.282±0.00 1.836±0.96 0.835±0.10 3.683±2.09 2.421±0.00 6.726±1.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R9 CIL_0003R9_0001 CGP 2:233354507-233566782
CIL_0007HK CIL_0007HK_0001 CGP 2:233475520-233773310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000187758 Usp40-001 protein_coding Mus_musculus 0 3559
ENSMUST00000188332 Usp40-002 nonsense_mediated_decay Mus_musculus 0 3214
ENSMUST00000040783 Usp40-003 protein_coding Mus_musculus 0 2543
ENSMUST00000186315 Usp40-004 retained_intron Mus_musculus 0 1679
ENSMUST00000189586 Usp40-005 retained_intron Mus_musculus 0 353
ENSMUST00000187871 Usp40-006 retained_intron Mus_musculus 0 296

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