C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003R9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000077044-ENSG00000085982 CGP 9606 2:233354507-233566782
GeneTranscriptPositionBiotype
ENSG00000077044 (DGKD)
diacylglycerol kinase, delta 130kDa 		ENST00000264057 (DGKD-001) 233354507-233472100 protein_coding
ENST00000409813 (DGKD-010) 233388154-233472096 protein_coding
ENST00000427930 (DGKD-011) 233354508-233435894 protein_coding
ENST00000430834 (DGKD-003) 233438313-233472104 nonsense_mediated_decay
ENST00000442524 (DGKD-014) 233354572-233392399 protein_coding
ENST00000447484 (DGKD-004) 233385945-233434899 protein_coding
ENST00000465569 (DGKD-007) 233448030-233449172 retained_intron
ENST00000471764 (DGKD-008) 233458239-233459867 retained_intron
ENST00000472732 (DGKD-012) 233408891-233435924 processed_transcript
ENST00000474488 (DGKD-002) 233434467-233442591 retained_intron
ENST00000480535 (DGKD-006) 233447701-233449155 processed_transcript
ENST00000489613 (DGKD-013) 233386054-233388985 retained_intron
ENST00000490764 (DGKD-005) 233419241-233457817 retained_intron
ENST00000495901 (DGKD-009) 233463814-233467150 retained_intron
ENST00000622717 (DGKD-201) 233388154-233472096 protein_coding
ENSG00000085982 (USP40)
ubiquitin specific peptidase 40 		ENST00000251722 (USP40-001) 233475526-233566782 protein_coding
ENST00000409945 (USP40-004) 233492664-233512502 protein_coding
ENST00000427112 (USP40-017) 233477392-233565590 protein_coding
ENST00000427947 (USP40-008) 233554325-233566710 retained_intron
ENST00000430158 (USP40-005) 233487681-233511758 protein_coding
ENST00000443711 (USP40-002) 233560743-233566734 protein_coding
ENST00000450940 (USP40-011) 233485541-233493477 nonsense_mediated_decay
ENST00000450966 (USP40-201) 233475520-233565590 protein_coding
ENST00000452724 (USP40-015) 233519426-233523252 protein_coding
ENST00000454354 (USP40-013) 233485587-233489461 protein_coding
ENST00000464956 (USP40-014) 233481236-233481642 processed_transcript
ENST00000473191 (USP40-016) 233485606-233491339 retained_intron
ENST00000483216 (USP40-010) 233496794-233512892 retained_intron
ENST00000483519 (USP40-006) 233475526-233489640 retained_intron
ENST00000484528 (USP40-007) 233556586-233566782 retained_intron
ENST00000485943 (USP40-009) 233525511-233542616 processed_transcript
ENST00000496298 (USP40-012) 233485566-233489869 processed_transcript
ENSG00000201013 (Y_RNA)
Y RNA 		ENST00000364143 (Y_RNA.1-409) 233379843-233379955 misc_RNA
ENSG00000271639 (RP11-289A15.1)
 ENST00000604535 (RP11-289A15.1-001) 233545482-233547032 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003R9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000070738-ENSMUSG00000005501 CGP 10090 1:87853287-88008551
GeneTranscriptPositionBiotype
ENSMUSG00000005501 (Usp40)
ubiquitin specific peptidase 40 		ENSMUST00000040783 (Usp40-003) 87945121-88008551 protein_coding
ENSMUST00000186315 (Usp40-004) 87985755-88008528 retained_intron
ENSMUST00000186670 (Usp40-009) 87949699-87951673 retained_intron
ENSMUST00000187758 (Usp40-001) 87946443-88008534 protein_coding
ENSMUST00000187871 (Usp40-006) 88005895-88008229 retained_intron
ENSMUST00000188332 (Usp40-002) 87946443-88008534 nonsense_mediated_decay
ENSMUST00000189409 (Usp40-007) 87945119-87975898 nonsense_mediated_decay
ENSMUST00000189586 (Usp40-005) 88005895-88008550 retained_intron
ENSMUST00000190446 (Usp40-008) 87965017-87967195 retained_intron
ENSMUSG00000070738 (Dgkd)
diacylglycerol kinase, delta 		ENSMUST00000027517 (Dgkd-001) 87853287-87944490 protein_coding
ENSMUST00000185260 (Dgkd-005) 87931982-87938253 protein_coding
ENSMUST00000189448 (Dgkd-007) 87938385-87945178 protein_coding
ENSMUST00000189726 (Dgkd-006) 87935283-87940265 retained_intron
ENSMUST00000190061 (Dgkd-002) 87934397-87945180 protein_coding
ENSMUST00000190243 (Dgkd-003) 87880435-87915744 retained_intron
ENSMUST00000191589 (Dgkd-004) 87917898-87921971 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003R9_0001ENSG00000077044ENST00000264057ENST00000409813ENST00000430834ENST00000447484ENST00000474488ENST00000490764ENST00000495901ENST00000622717ENSG00000085982ENST00000251722ENST00000409945ENST00000427112ENST00000427947ENST00000430158ENST00000450966ENST00000483216ENST00000483519ENST00000484528ENSG00000201013ENST00000364143ENSG00000271639ENST00000604535CIL_0003R9_0002ENSMUSG00000005501ENSMUST00000040783ENSMUST00000187758ENSMUST00000189409ENSMUSG00000070738ENSMUST00000027517ENSMUST00000190061
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077044 ENST00000264057 0.951±0.00 1.826±0.00 0.256±0.00 0.777±0.06 0.964±0.52 1.793±0.47 0.697±0.47 0.766±0.49 0.796±0.35 1.677±0.00 2.408±0.00 3.488±0.62 5.365±2.11 7.399±2.32
ENST00000409813 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.627±0.00 0.937±0.00 1.198±0.00 N/A N/A
ENST00000427930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430834 N/A N/A N/A N/A 0.542±0.00 0.625±0.00 N/A 0.477±0.00 N/A 5.016±0.00 4.215±0.99 2.966±0.55 2.403±0.00 5.405±0.00
ENST00000442524 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447484 N/A N/A N/A N/A N/A N/A N/A 1.991±0.00 N/A N/A N/A N/A N/A N/A
ENST00000465569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474488 N/A N/A N/A N/A N/A N/A N/A 0.713±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480535 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490764 N/A N/A N/A 0.977±0.43 N/A N/A 0.508±0.00 N/A N/A N/A N/A 0.993±0.00 N/A N/A
ENST00000495901 N/A N/A N/A N/A N/A N/A N/A 1.798±0.00 N/A N/A N/A N/A N/A N/A
ENST00000622717 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.634±0.00 N/A 1.242±0.00 N/A N/A
ENSG00000085982 ENST00000251722 2.883±0.00 2.221±0.00 1.237±0.00 0.802±0.23 3.224±0.00 0.632±0.00 1.483±1.05 3.282±0.00 1.836±0.96 0.835±0.10 N/A 3.683±2.09 2.421±0.00 6.726±1.07
ENST00000409945 N/A N/A N/A N/A 1.794±0.00 2.242±0.00 N/A N/A N/A 2.943±0.00 N/A N/A N/A N/A
ENST00000427112 N/A N/A N/A 0.670±0.13 0.569±0.00 N/A 0.661±0.00 N/A 2.204±0.00 1.559±0.00 N/A 2.103±0.00 N/A N/A
ENST00000427947 N/A N/A 7.648±0.00 3.175±0.00 5.374±0.00 N/A 1.495±0.00 N/A N/A 8.326±0.00 4.258±0.00 9.167±0.00 N/A N/A
ENST00000430158 N/A N/A N/A 1.701±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.758±0.00 1.787±0.00 2.600±0.25 N/A
ENST00000452724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.115±0.00 N/A 21.116±0.00
ENST00000483519 N/A 2.428±0.00 N/A N/A 2.295±0.00 N/A N/A N/A N/A N/A 0.853±0.00 7.196±0.00 3.346±0.09 N/A
ENST00000484528 N/A N/A N/A N/A N/A 5.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000201013 ENST00000364143 N/A 0.757±0.00 N/A 0.190±0.00 N/A N/A N/A N/A N/A N/A N/A 0.670±0.00 N/A 0.637±0.00
ENSG00000271639 ENST00000604535 N/A N/A N/A 0.024±0.00 N/A 0.405±0.00 N/A N/A 0.218±0.00 0.396±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005501 ENSMUST00000040783 7.792±1.06 N/A N/A 5.615±0.70 N/A N/A 3.944±0.48 5.065±0.71 3.115±0.76 6.248±0.09 2.948±0.00 6.212±0.47 N/A N/A
ENSMUST00000186315 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000186670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187758 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.842±0.00 6.309±0.00 3.742±0.00
ENSMUST00000187871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189409 5.106±0.00 5.019±0.80 4.529±1.19 5.887±0.22 N/A N/A N/A N/A 2.176±0.44 N/A N/A 6.762±1.53 N/A N/A
ENSMUST00000189586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000070738 ENSMUST00000027517 27.053±5.17 12.376±3.56 8.276±0.93 18.994±1.99 32.597±3.90 18.391±3.20 9.863±0.47 13.450±0.67 5.104±1.81 20.961±2.06 7.765±0.37 17.201±2.15 13.657±3.86 28.454±9.89
ENSMUST00000185260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190061 N/A N/A 2.877±0.00 N/A 10.450±0.00 8.608±0.56 N/A 4.305±0.00 1.981±0.22 N/A N/A N/A N/A N/A
ENSMUST00000190243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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