C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000085982 USP40 9606 - 2:233475520-233566782 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000251722 USP40-001 233475526-233566782 protein_coding
  ENST00000409945 USP40-004 233492664-233512502 protein_coding
  ENST00000427112 USP40-017 233477392-233565590 protein_coding
  ENST00000427947 USP40-008 233554325-233566710 retained_intron
  ENST00000430158 USP40-005 233487681-233511758 protein_coding
  ENST00000443711 USP40-002 233560743-233566734 protein_coding
  ENST00000450940 USP40-011 233485541-233493477 nonsense_mediated_decay
  ENST00000450966 USP40-201 233475520-233565590 protein_coding
  ENST00000452724 USP40-015 233519426-233523252 protein_coding
  ENST00000454354 USP40-013 233485587-233489461 protein_coding
  ENST00000464956 USP40-014 233481236-233481642 processed_transcript
  ENST00000473191 USP40-016 233485606-233491339 retained_intron
  ENST00000483216 USP40-010 233496794-233512892 retained_intron
  ENST00000483519 USP40-006 233475526-233489640 retained_intron
  ENST00000484528 USP40-007 233556586-233566782 retained_intron
  ENST00000485943 USP40-009 233525511-233542616 processed_transcript
  ENST00000496298 USP40-012 233485566-233489869 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251722ENST00000409945ENST00000427112ENST00000427947ENST00000430158ENST00000450966ENST00000483216ENST00000483519ENST00000484528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251722 2.883±0.00 2.221±0.00 1.237±0.00 0.802±0.23 3.224±0.00 0.632±0.00 1.483±1.05 3.282±0.00 1.836±0.96 0.835±0.10 N/A 3.683±2.09 2.421±0.00 6.726±1.07
ENST00000409945 N/A N/A N/A N/A 1.794±0.00 2.242±0.00 N/A N/A N/A 2.943±0.00 N/A N/A N/A N/A
ENST00000427112 N/A N/A N/A 0.670±0.13 0.569±0.00 N/A 0.661±0.00 N/A 2.204±0.00 1.559±0.00 N/A 2.103±0.00 N/A N/A
ENST00000427947 N/A N/A 7.648±0.00 3.175±0.00 5.374±0.00 N/A 1.495±0.00 N/A N/A 8.326±0.00 4.258±0.00 9.167±0.00 N/A N/A
ENST00000430158 N/A N/A N/A 1.701±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.758±0.00 1.787±0.00 2.600±0.25 N/A
ENST00000483216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.115±0.00 N/A 21.116±0.00
ENST00000483519 N/A 2.428±0.00 N/A N/A 2.295±0.00 N/A N/A N/A N/A N/A 0.853±0.00 7.196±0.00 3.346±0.09 N/A
ENST00000484528 N/A N/A N/A N/A N/A 5.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R9 CIL_0003R9_0001 CGP 2:233354507-233566782
CIL_0007HK CIL_0007HK_0001 CGP 2:233475520-233773310

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008234 IEA cysteine-type peptidase activity
GO:0036459 IEA ubiquitinyl hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071197 usp40 ubiquitin specific peptidase 40 protein_coding Danio_rerio
ENSMUSG00000005501 Usp40 ubiquitin specific peptidase 40 protein_coding Mus_musculus

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