C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000253686 MRPS25-001 ENSG00000131368 9606 - 3:15048518-15065335 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000253686
Transcript ID Adrenal Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000253686 7.883±0.00 7.786±0.00 5.503±1.59 5.602±3.27 6.834±4.43 3.389±0.00 2.406±0.00 9.479±2.50 5.656±0.00 12.039±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AG CIL_0005AG_0001 CGP 3:14818962-15053600
CIL_0005AF CIL_0005AF_0001 CGP 3:14947584-15065335
CIL_0005AI CIL_0005AI_0001 CGP 3:15042460-15099163

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005739 IDA mitochondrion
GO:0005840 IEA ribosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140438 Mrps25-001 protein_coding Mus_musculus 0 558
ENSMUST00000113460 Nr2c2-001 protein_coding Mus_musculus 0 377
ENSMUST00000134132 Mrps25-002 retained_intron Mus_musculus 0 261
ENSMUST00000125797 Atp13a2-003 retained_intron Mus_musculus 0.0000001 64

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