C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258387 PAX3-003 ENSG00000135903 9606 - 2:222293636-222298865 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000258387
Transcript ID Bladder
ENST00000258387 0.335±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XL CIL_0006XL_0001 CGP 2:221418027-222298996
CIL_0008C0 CIL_0008C0_0001 VISTA 2:221914664-222515720
CIL_0008LF CIL_0008LF_0001 VISTA 2:221986023-222587201

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 TAS apoptotic process
GO:0007605 TAS sensory perception of sound
GO:0009887 TAS organ morphogenesis
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172555 Pax3-003 processed_transcript Mus_musculus 0 950
ENSMUST00000087086 Pax3-001 protein_coding Mus_musculus 0 950
ENSMUST00000004994 Pax3-002 protein_coding Mus_musculus 0 902

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