C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006XL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000116106-ENSG00000135903 CGP 9606 2:221418027-222298996
GeneTranscriptPositionBiotype
ENSG00000116106 (EPHA4)
EPH receptor A4 		ENST00000281821 (EPHA4-201) 221418029-221572290 protein_coding
ENST00000409854 (EPHA4-003) 221425599-221572283 protein_coding
ENST00000409938 (EPHA4-001) 221425901-221574202 protein_coding
ENST00000415749 (EPHA4-013) 221563993-221572300 nonsense_mediated_decay
ENST00000419964 (EPHA4-005) 221563997-221569481 protein_coding
ENST00000424339 (EPHA4-009) 221425915-221434249 nonsense_mediated_decay
ENST00000434266 (EPHA4-004) 221564279-221574158 protein_coding
ENST00000441679 (EPHA4-006) 221457954-221502560 protein_coding
ENST00000443796 (EPHA4-012) 221457889-221572300 protein_coding
ENST00000463446 (EPHA4-007) 221482440-221501344 retained_intron
ENST00000469354 (EPHA4-014) 221418027-221425575 processed_transcript
ENST00000472696 (EPHA4-015) 221420445-221425540 processed_transcript
ENST00000495693 (EPHA4-008) 221436457-221437496 retained_intron
ENST00000541600 (EPHA4-002) 221564106-221572358 protein_coding
ENSG00000135903 (PAX3)
paired box 3 		ENST00000258387 (PAX3-003) 222293636-222298865 protein_coding
ENST00000336840 (PAX3-002) 222200788-222298996 protein_coding
ENST00000344493 (PAX3-001) 222199888-222298996 protein_coding
ENST00000350526 (PAX3-006) 222199891-222298752 protein_coding
ENST00000392069 (PAX3-008) 222199888-222298981 protein_coding
ENST00000392070 (PAX3-004) 222200986-222298996 protein_coding
ENST00000409551 (PAX3-009) 222201358-222298895 protein_coding
ENST00000409828 (PAX3-005) 222293630-222298746 protein_coding
ENST00000464706 (PAX3-007) 222201966-222221699 processed_transcript
ENST00000555548 (PAX3-010) 222202137-222221410 retained_intron
ENSG00000163081 (CCDC140)
coiled-coil domain containing 140 		ENST00000295226 (CCDC140-001) 222298147-222305217 protein_coding
ENST00000440903 (CCDC140-002) 222302978-222303953 protein_coding
ENSG00000226331 (AC009302.4)
 ENST00000448062 (AC009302.4-001) 222044525-222044994 processed_pseudogene
ENSG00000226666 (HSPA9P1)
heat shock 70kDa protein 9 pseudogene 1 		ENST00000432228 (HSPA9P1-001) 221961737-221963765 processed_pseudogene
ENSG00000226726 (TMEM256P2)
transmembrane protein 256 pseudogene 2 		ENST00000440241 (TMEM256P2-001) 221532668-221533008 processed_pseudogene
ENSG00000230406 (AC079834.1)
 ENST00000414016 (AC079834.1-001) 221592441-221592861 processed_pseudogene
ENSG00000233868 (AC009302.2)
 ENST00000417147 (AC009302.2-001) 221944223-221944612 processed_pseudogene
ENSG00000234446 (AC068489.1)
 ENST00000453706 (AC068489.1-001) 221637543-221641813 lincRNA
CIL_0006XL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026235-ENSMUSG00000004872 CGP 10090 1:77367185-78197134
GeneTranscriptPositionBiotype
ENSMUSG00000004872 (Pax3)
paired box 3 		ENSMUST00000004994 (Pax3-002) 78101267-78196838 protein_coding
ENSMUST00000087086 (Pax3-001) 78101270-78197134 protein_coding
ENSMUST00000172555 (Pax3-003) 78183456-78197113 processed_transcript
ENSMUSG00000026235 (Epha4)
Eph receptor A4 		ENSMUST00000027451 (Epha4-201) 77367185-77515088 protein_coding
ENSMUST00000186930 (Epha4-005) 77401223-77515083 protein_coding
ENSMUST00000187346 (Epha4-006) 77373613-77377607 protein_coding
ENSMUST00000188797 (Epha4-001) 77373139-77515088 protein_coding
ENSMUST00000188952 (Epha4-002) 77367189-77515079 nonsense_mediated_decay
ENSMUST00000189934 (Epha4-004) 77396797-77515085 retained_intron
ENSMUST00000190149 (Epha4-003) 77373631-77515079 nonsense_mediated_decay
ENSMUSG00000101506 (RP23-39N17.1)
predicted gene 28385 		ENSMUST00000185671 (RP23-39N17.1-001) 77570672-77570963 processed_pseudogene
ENSMUSG00000101849 (RP23-346J11.1)
predicted gene 28386 		ENSMUST00000189147 (RP23-346J11.1-001) 77515280-77517128 lincRNA
ENSMUSG00000102052 (RP23-266D4.1)
predicted gene 28387 		ENSMUST00000189245 (RP23-266D4.1-001) 77942966-77972376 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006XL_0001ENSG00000116106ENST00000281821ENST00000409854ENST00000409938ENST00000415749ENST00000419964ENST00000424339ENST00000434266ENST00000441679ENST00000443796ENST00000463446ENST00000469354ENST00000472696ENST00000495693ENST00000541600ENSG00000135903ENST00000258387ENST00000336840ENST00000344493ENST00000350526ENST00000392069ENST00000392070ENST00000409551ENST00000409828ENST00000464706ENST00000555548ENSG00000163081ENST00000295226ENST00000440903ENSG00000226331ENST00000448062ENSG00000226666ENST00000432228ENSG00000226726ENST00000440241ENSG00000230406ENST00000414016ENSG00000233868ENST00000417147ENSG00000234446ENST00000453706CIL_0006XL_0002ENSMUSG00000004872ENSMUST00000004994ENSMUST00000087086ENSMUST00000172555ENSMUSG00000026235ENSMUST00000027451ENSMUST00000186930ENSMUST00000187346ENSMUST00000188797ENSMUST00000188952ENSMUST00000189934ENSMUST00000190149ENSMUSG00000101506ENSMUST00000185671ENSMUSG00000101849ENSMUST00000189147ENSMUSG00000102052ENSMUST00000189245
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006XL_0001ENSG00000116106ENST00000281821ENST00000409854ENST00000409938ENST00000419964ENST00000443796ENST00000469354ENST00000472696ENSG00000135903ENST00000258387ENST00000336840ENST00000344493ENST00000392069ENST00000392070ENST00000409551ENST00000464706ENST00000555548ENSG00000163081ENST00000295226ENSG00000226331ENST00000448062ENSG00000226666ENST00000432228ENSG00000226726ENST00000440241ENSG00000230406ENST00000414016ENSG00000233868ENST00000417147ENSG00000234446ENST00000453706CIL_0006XL_0002ENSMUSG00000004872ENSMUST00000004994ENSMUST00000087086ENSMUST00000172555ENSMUSG00000026235ENSMUST00000027451ENSMUST00000186930ENSMUST00000187346ENSMUST00000188797ENSMUST00000188952ENSMUST00000189934ENSMUST00000190149ENSMUSG00000101506ENSMUST00000185671ENSMUSG00000101849ENSMUST00000189147ENSMUSG00000102052ENSMUST00000189245
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000116106 ENST00000281821 1.331±0.00 1.477±0.00 N/A 10.231±0.99 0.723±0.00 1.217±0.82 1.892±1.11 1.152±0.00 N/A 0.657±0.00 0.729±0.00 1.301±0.67 0.229±0.00 2.891±1.52
ENST00000409854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.257±0.00 N/A N/A
ENST00000409938 N/A N/A N/A 6.296±0.00 N/A 1.604±0.00 0.994±0.00 0.079±0.00 1.355±0.00 1.902±0.00 0.174±0.00 0.988±0.00 0.194±0.00 3.916±0.00
ENST00000415749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419964 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.319±0.00 N/A N/A N/A N/A
ENST00000424339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000441679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443796 N/A N/A N/A N/A N/A N/A N/A 0.724±0.00 N/A N/A N/A N/A N/A N/A
ENST00000463446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469354 N/A N/A N/A 4.725±0.00 0.620±0.00 1.596±0.00 N/A 0.262±0.23 N/A 1.332±0.00 N/A 1.992±0.69 0.255±0.06 4.182±0.00
ENST00000472696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.519±0.00 N/A N/A N/A
ENST00000495693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135903 ENST00000258387 N/A N/A 0.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000336840 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A 0.109±0.00 N/A 0.175±0.00 N/A N/A N/A
ENST00000344493 N/A N/A N/A N/A 0.035±0.01 N/A N/A N/A N/A N/A 0.344±0.00 0.006±0.00 N/A N/A
ENST00000350526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392069 N/A N/A N/A 0.051±0.00 0.098±0.00 N/A N/A N/A N/A N/A 0.151±0.00 0.009±0.00 N/A 0.100±0.00
ENST00000392070 N/A 0.029±0.00 N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A 0.274±0.00
ENST00000409551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.584±0.00 N/A N/A 0.216±0.00
ENST00000409828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464706 N/A N/A 0.092±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555548 N/A N/A N/A 0.130±0.00 1.535±0.00 0.310±0.00 N/A N/A N/A N/A 3.486±0.00 N/A N/A N/A
ENSG00000163081 ENST00000295226 N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226331 ENST00000448062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00
ENSG00000226666 ENST00000432228 0.172±0.00 0.110±0.00 N/A 0.376±0.00 0.115±0.00 0.059±0.00 0.138±0.13 0.026±0.00 0.501±0.00 0.067±0.01 0.363±0.00 0.017±0.00 N/A 0.171±0.14
ENSG00000226726 ENST00000440241 N/A 0.064±0.00 N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000230406 ENST00000414016 0.145±0.00 0.077±0.00 N/A 0.160±0.00 0.116±0.00 0.107±0.00 0.036±0.00 0.156±0.00 0.071±0.00 0.152±0.00 0.277±0.00 0.088±0.00 N/A 0.049±0.01
ENSG00000233868 ENST00000417147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 0.053±0.00
ENSG00000234446 ENST00000453706 0.104±0.00 0.104±0.00 N/A 0.160±0.00 0.203±0.00 0.091±0.00 N/A N/A 0.186±0.00 0.048±0.00 N/A N/A N/A 0.336±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004872 ENSMUST00000004994 N/A N/A 0.003±0.00 0.513±0.38 0.101±0.00 N/A N/A 0.055±0.00 0.010±0.01 0.016±0.00 0.031±0.02 0.049±0.03 0.112±0.05 0.172±0.08
ENSMUST00000087086 N/A N/A N/A 1.375±1.07 0.018±0.00 N/A 0.035±0.01 0.038±0.00 0.011±0.01 0.020±0.00 0.053±0.01 N/A 0.078±0.04 0.065±0.02
ENSMUST00000172555 N/A N/A 0.002±0.00 N/A 0.025±0.00 0.058±0.04 N/A 0.005±0.00 0.007±0.00 0.014±0.00 0.011±0.00 0.059±0.00 0.023±0.00 N/A
ENSMUSG00000026235 ENSMUST00000027451 0.923±0.00 0.122±0.09 1.681±0.00 6.775±3.75 0.297±0.03 0.463±0.13 5.096±0.79 0.415±0.04 0.026±0.01 N/A 0.389±0.00 0.764±0.29 1.266±0.13 0.019±0.01
ENSMUST00000186930 N/A 0.624±0.20 N/A N/A 1.541±0.00 3.968±0.00 N/A N/A 0.104±0.00 N/A N/A 2.708±0.00 N/A N/A
ENSMUST00000187346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.042±0.00
ENSMUST00000188797 N/A 0.158±0.00 N/A N/A 0.308±0.00 N/A N/A N/A 0.048±0.01 N/A N/A 1.443±0.61 N/A 0.123±0.00
ENSMUST00000188952 1.661±0.46 0.081±0.03 2.195±0.95 14.360±1.71 0.420±0.12 0.784±0.14 5.041±2.68 0.748±0.19 0.119±0.09 3.137±0.90 0.317±0.10 1.027±0.57 0.887±0.50 0.067±0.08
ENSMUST00000189934 N/A 0.093±0.00 N/A N/A 0.170±0.00 0.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190149 1.015±0.24 0.239±0.08 N/A 25.029±0.00 0.442±0.13 0.847±0.22 2.957±0.56 0.647±0.17 0.039±0.01 1.964±0.19 N/A 1.383±0.48 1.607±0.97 0.120±0.02
ENSMUSG00000101506 ENSMUST00000185671 N/A N/A N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000101849 ENSMUST00000189147 N/A N/A 0.035±0.01 0.187±0.04 N/A 0.066±0.04 0.033±0.00 N/A 0.008±0.00 0.032±0.01 N/A 0.042±0.01 0.030±0.02 0.158±0.12
ENSMUSG00000102052 ENSMUST00000189245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A

Loading