C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: paired box 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000135903 PAX3 9606 - 2:222199888-222298996 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000258387 PAX3-003 222293636-222298865 protein_coding
  ENST00000336840 PAX3-002 222200788-222298996 protein_coding
  ENST00000344493 PAX3-001 222199888-222298996 protein_coding
  ENST00000350526 PAX3-006 222199891-222298752 protein_coding
  ENST00000392069 PAX3-008 222199888-222298981 protein_coding
  ENST00000392070 PAX3-004 222200986-222298996 protein_coding
  ENST00000409551 PAX3-009 222201358-222298895 protein_coding
  ENST00000409828 PAX3-005 222293630-222298746 protein_coding
  ENST00000464706 PAX3-007 222201966-222221699 processed_transcript
  ENST00000555548 PAX3-010 222202137-222221410 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverMuscleOvaryTestisENST00000258387ENST00000336840ENST00000344493ENST00000392069ENST00000392070ENST00000409551ENST00000464706ENST00000555548
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Muscle Ovary Testis
ENST00000258387 N/A 0.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000336840 N/A N/A N/A N/A N/A 0.005±0.00 0.109±0.00 0.175±0.00 N/A N/A
ENST00000344493 N/A N/A N/A 0.035±0.01 N/A N/A N/A 0.344±0.00 0.006±0.00 N/A
ENST00000392069 N/A N/A 0.051±0.00 0.098±0.00 N/A N/A N/A 0.151±0.00 0.009±0.00 0.100±0.00
ENST00000392070 0.029±0.00 N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A 0.274±0.00
ENST00000409551 N/A N/A N/A N/A N/A N/A N/A 0.584±0.00 N/A 0.216±0.00
ENST00000464706 N/A 0.092±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000555548 N/A N/A 0.130±0.00 1.535±0.00 0.310±0.00 N/A N/A 3.486±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XL CIL_0006XL_0001 CGP 2:221418027-222298996
CIL_0008C0 CIL_0008C0_0001 VISTA 2:221914664-222515720
CIL_0008LF CIL_0008LF_0001 VISTA 2:221986023-222587201

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001755 IEA neural crest cell migration
GO:0001843 IEA neural tube closure
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006915 TAS apoptotic process
GO:0007507 IEA heart development
GO:0007517 IEA muscle organ development
GO:0007605 TAS sensory perception of sound
GO:0008283 IEA cell proliferation
GO:0008284 IEA positive regulation of cell proliferation
GO:0009887 TAS organ morphogenesis
GO:0014807 IEA regulation of somitogenesis
GO:0016477 IEA cell migration
GO:0021527 IEA spinal cord association neuron differentiation
GO:0021915 IEA neural tube development
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048066 IEA developmental pigmentation
GO:0048663 IEA neuron fate commitment
GO:0060594 IEA mammary gland specification
GO:0071837 IEA HMG box domain binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010192 pax3a paired box gene 3a protein_coding Danio_rerio
ENSDARG00000028348 pax3b paired box gene 3b protein_coding Danio_rerio
ENSMUSG00000004872 Pax3 paired box 3 protein_coding Mus_musculus

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