C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087086 Pax3-001 ENSMUSG00000004872 10090 - 1:78101270-78197134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000087086
Transcript ID Brain Breast Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000087086 1.375±1.07 0.018±0.00 0.035±0.01 0.038±0.00 0.011±0.01 0.020±0.00 0.053±0.01 0.078±0.04 0.065±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XL CIL_0006XL_0002 CGP 1:77367185-78197134
CIL_0008C0 CIL_0008C0_0002 VISTA 1:77814828-78415847
CIL_0008LF CIL_0008LF_0002 VISTA 1:77884098-78485294
CIL_000464 CIL_000464_0002 CGP 1:78101267-78420289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001755 IMP neural crest cell migration
GO:0001843 IMP neural tube closure
GO:0003682 IDA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 TAS transcription factor complex
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007507 IMP heart development
GO:0007517 IMP muscle organ development
GO:0008283 IMP cell proliferation
GO:0008284 IMP positive regulation of cell proliferation
GO:0014807 IGI regulation of somitogenesis
GO:0016477 IMP cell migration
GO:0021527 IGI spinal cord association neuron differentiation
GO:0021915 IGI neural tube development
GO:0035914 NAS skeletal muscle cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 ISO positive regulation of transcription, DNA-templated
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0048066 IMP developmental pigmentation
GO:0048663 IGI neuron fate commitment
GO:0055007 NAS cardiac muscle cell differentiation
GO:0060594 IMP mammary gland specification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258387 PAX3-003 protein_coding Homo_sapiens 0 950
ENST00000336840 PAX3-002 protein_coding Homo_sapiens 0 1805
ENST00000344493 PAX3-001 protein_coding Homo_sapiens 0 1805
ENST00000350526 PAX3-006 protein_coding Homo_sapiens 0 2756
ENST00000375375 PAX7-001 protein_coding Homo_sapiens 0 564
ENST00000392069 PAX3-008 protein_coding Homo_sapiens 0 2128
ENST00000392070 PAX3-004 protein_coding Homo_sapiens 0 2128
ENST00000400661 PAX7-003 protein_coding Homo_sapiens 0 592
ENST00000409551 PAX3-009 protein_coding Homo_sapiens 0 2108
ENST00000409828 PAX3-005 protein_coding Homo_sapiens 0 928
ENST00000420770 PAX7-002 protein_coding Homo_sapiens 0 562
ENST00000464706 PAX3-007 processed_transcript Homo_sapiens 0 881
ENST00000555548 PAX3-010 retained_intron Homo_sapiens 0 667

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