C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008C0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs493 VISTA 9606 2:221914664-222515720
GeneTranscriptPositionBiotype
ENSG00000135903 (PAX3)
paired box 3 		ENST00000258387 (PAX3-003) 222293636-222298865 protein_coding
ENST00000336840 (PAX3-002) 222200788-222298996 protein_coding
ENST00000344493 (PAX3-001) 222199888-222298996 protein_coding
ENST00000350526 (PAX3-006) 222199891-222298752 protein_coding
ENST00000392069 (PAX3-008) 222199888-222298981 protein_coding
ENST00000392070 (PAX3-004) 222200986-222298996 protein_coding
ENST00000409551 (PAX3-009) 222201358-222298895 protein_coding
ENST00000409828 (PAX3-005) 222293630-222298746 protein_coding
ENST00000464706 (PAX3-007) 222201966-222221699 processed_transcript
ENST00000555548 (PAX3-010) 222202137-222221410 retained_intron
ENSG00000163081 (CCDC140)
coiled-coil domain containing 140 		ENST00000295226 (CCDC140-001) 222298147-222305217 protein_coding
ENST00000440903 (CCDC140-002) 222302978-222303953 protein_coding
ENSG00000163082 (SGPP2)
sphingosine-1-phosphate phosphatase 2 		ENST00000321276 (SGPP2-001) 222424517-222560948 protein_coding
ENSG00000202016 (RNU6-619P)
RNA, U6 small nuclear 619, pseudogene 		ENST00000365146 (RNU6-619P-201) 222498291-222498398 snRNA
ENSG00000226331 (AC009302.4)
 ENST00000448062 (AC009302.4-001) 222044525-222044994 processed_pseudogene
ENSG00000226666 (HSPA9P1)
heat shock 70kDa protein 9 pseudogene 1 		ENST00000432228 (HSPA9P1-001) 221961737-221963765 processed_pseudogene
ENSG00000228670 (NANOGP2)
Nanog homeobox pseudogene 2 		ENST00000435391 (NANOGP2-001) 222452400-222453126 processed_pseudogene
ENSG00000233868 (AC009302.2)
 ENST00000417147 (AC009302.2-001) 221944223-221944612 processed_pseudogene
ENSG00000234285 (GAPDHP49)
glyceraldehyde 3 phosphate dehydrogenase pseudogene 49 		ENST00000421421 (GAPDHP49-001) 222503883-222504843 processed_pseudogene
ENSG00000237732 (AC010980.2)
 ENST00000424010 (AC010980.2-003) 222320674-222321659 processed_transcript
ENST00000429475 (AC010980.2-001) 222320694-222321722 processed_transcript
ENST00000439237 (AC010980.2-004) 222321106-222321538 processed_transcript
ENST00000446532 (AC010980.2-002) 222320863-222321722 processed_transcript
ENST00000555502 (AC010980.2-006) 222318471-222321722 processed_transcript
ENST00000587192 (AC010980.2-005) 222318275-222321512 transcribed_unprocessed_pseudogene
ENST00000589724 (AC010980.2-008) 222319298-222352989 processed_transcript
ENST00000590427 (AC010980.2-007) 222318701-222342541 processed_transcript
ENSG00000267034 (RP11-384O8.1)
 ENST00000587099 (RP11-384O8.1-001) 222317242-222318653 lincRNA
CIL_0008C0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs493 VISTA 10090 1:77814828-78415847
GeneTranscriptPositionBiotype
ENSMUSG00000004872 (Pax3)
paired box 3 		ENSMUST00000004994 (Pax3-002) 78101267-78196838 protein_coding
ENSMUST00000087086 (Pax3-001) 78101270-78197134 protein_coding
ENSMUST00000172555 (Pax3-003) 78183456-78197113 processed_transcript
ENSMUSG00000032908 (Sgpp2)
sphingosine-1-phosphate phosphotase 2 		ENSMUST00000036172 (Sgpp2-001) 78310345-78420289 protein_coding
ENSMUSG00000099561 (RP24-404O8.1)
predicted gene 28410 		ENSMUST00000188113 (RP24-404O8.1-001) 78325628-78340106 antisense
ENSMUSG00000102052 (RP23-266D4.1)
predicted gene 28387 		ENSMUST00000189245 (RP23-266D4.1-001) 77942966-77972376 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008C0_0001ENSG00000135903ENST00000258387ENST00000336840ENST00000344493ENST00000350526ENST00000392069ENST00000392070ENST00000409551ENST00000409828ENST00000464706ENST00000555548ENSG00000163081ENST00000295226ENST00000440903ENSG00000163082ENST00000321276ENSG00000202016ENST00000365146ENSG00000226331ENST00000448062ENSG00000226666ENST00000432228ENSG00000228670ENST00000435391ENSG00000233868ENST00000417147ENSG00000234285ENST00000421421ENSG00000237732ENST00000424010ENST00000429475ENST00000439237ENST00000446532ENST00000555502ENST00000587192ENST00000589724ENST00000590427ENSG00000267034ENST00000587099CIL_0008C0_0002ENSMUSG00000004872ENSMUST00000004994ENSMUST00000087086ENSMUST00000172555ENSMUSG00000032908ENSMUST00000036172ENSMUSG00000099561ENSMUST00000188113ENSMUSG00000102052ENSMUST00000189245
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008C0_0001ENSG00000135903ENST00000258387ENST00000336840ENST00000344493ENST00000392069ENST00000392070ENST00000409551ENST00000464706ENST00000555548ENSG00000163081ENST00000295226ENSG00000163082ENST00000321276ENSG00000202016ENST00000365146ENSG00000226331ENST00000448062ENSG00000226666ENST00000432228ENSG00000228670ENST00000435391ENSG00000233868ENST00000417147ENSG00000234285ENST00000421421ENSG00000237732ENST00000424010ENST00000429475ENST00000555502ENST00000587192ENST00000589724ENST00000590427ENSG00000267034ENST00000587099CIL_0008C0_0002ENSMUSG00000004872ENSMUST00000004994ENSMUST00000087086ENSMUST00000172555ENSMUSG00000032908ENSMUST00000036172ENSMUSG00000099561ENSMUST00000188113ENSMUSG00000102052ENSMUST00000189245
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135903 ENST00000258387 N/A N/A 0.335±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000336840 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A 0.109±0.00 N/A 0.175±0.00 N/A N/A N/A
ENST00000344493 N/A N/A N/A N/A 0.035±0.01 N/A N/A N/A N/A N/A 0.344±0.00 0.006±0.00 N/A N/A
ENST00000350526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392069 N/A N/A N/A 0.051±0.00 0.098±0.00 N/A N/A N/A N/A N/A 0.151±0.00 0.009±0.00 N/A 0.100±0.00
ENST00000392070 N/A 0.029±0.00 N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A N/A 0.274±0.00
ENST00000409551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.584±0.00 N/A N/A 0.216±0.00
ENST00000409828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464706 N/A N/A 0.092±0.00 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555548 N/A N/A N/A 0.130±0.00 1.535±0.00 0.310±0.00 N/A N/A N/A N/A 3.486±0.00 N/A N/A N/A
ENSG00000163081 ENST00000295226 N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440903 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163082 ENST00000321276 0.110±0.00 0.348±0.00 1.774±0.00 5.712±0.00 0.670±0.08 0.610±0.00 3.032±2.36 7.633±7.59 0.303±0.25 3.319±1.92 0.163±0.00 4.065±3.85 0.110±0.03 1.214±0.36
ENSG00000202016 ENST00000365146 N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A N/A N/A 0.446±0.00 N/A N/A
ENSG00000226331 ENST00000448062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00
ENSG00000226666 ENST00000432228 0.172±0.00 0.110±0.00 N/A 0.376±0.00 0.115±0.00 0.059±0.00 0.138±0.13 0.026±0.00 0.501±0.00 0.067±0.01 0.363±0.00 0.017±0.00 N/A 0.171±0.14
ENSG00000228670 ENST00000435391 N/A N/A 0.139±0.00 0.317±0.00 N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A
ENSG00000233868 ENST00000417147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 0.053±0.00
ENSG00000234285 ENST00000421421 N/A N/A 0.629±0.00 N/A N/A 0.679±0.00 0.089±0.00 N/A N/A 0.893±0.00 N/A 0.131±0.00 N/A N/A
ENSG00000237732 ENST00000424010 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A
ENST00000429475 N/A N/A 0.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.324±0.00 N/A 84.102±55.32
ENST00000439237 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555502 N/A N/A N/A N/A N/A 0.656±0.00 0.264±0.00 N/A N/A N/A N/A N/A 0.042±0.00 N/A
ENST00000587192 0.031±0.00 N/A 0.209±0.00 1.225±0.00 0.267±0.00 0.909±0.00 1.747±0.00 0.698±0.00 0.167±0.00 0.223±0.00 N/A 0.236±0.01 0.240±0.15 N/A
ENST00000589724 0.025±0.00 0.172±0.00 N/A N/A 0.285±0.22 N/A N/A 0.240±0.00 0.045±0.00 N/A N/A N/A N/A N/A
ENST00000590427 N/A 0.676±0.00 N/A N/A N/A N/A N/A 0.303±0.00 N/A 0.059±0.00 N/A N/A N/A N/A
ENSG00000267034 ENST00000587099 N/A 0.043±0.00 N/A 1.960±0.28 N/A 0.799±0.00 0.119±0.00 N/A 0.075±0.02 0.039±0.00 0.013±0.00 0.082±0.00 0.036±0.01 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004872 ENSMUST00000004994 N/A N/A 0.003±0.00 0.513±0.38 0.101±0.00 N/A N/A 0.055±0.00 0.010±0.01 0.016±0.00 0.031±0.02 0.049±0.03 0.112±0.05 0.172±0.08
ENSMUST00000087086 N/A N/A N/A 1.375±1.07 0.018±0.00 N/A 0.035±0.01 0.038±0.00 0.011±0.01 0.020±0.00 0.053±0.01 N/A 0.078±0.04 0.065±0.02
ENSMUST00000172555 N/A N/A 0.002±0.00 N/A 0.025±0.00 0.058±0.04 N/A 0.005±0.00 0.007±0.00 0.014±0.00 0.011±0.00 0.059±0.00 0.023±0.00 N/A
ENSMUSG00000032908 ENSMUST00000036172 2.508±0.12 0.934±0.30 N/A 3.153±0.00 N/A 44.296±10.11 N/A 7.980±1.02 N/A 17.494±0.22 N/A 4.512±1.41 6.310±2.83 4.682±0.64
ENSMUSG00000099561 ENSMUST00000188113 0.026±0.00 0.144±0.07 0.006±0.00 0.037±0.02 N/A 0.206±0.07 N/A 0.081±0.02 0.006±0.00 0.063±0.02 N/A 0.627±0.26 0.045±0.00 0.144±0.11
ENSMUSG00000102052 ENSMUST00000189245 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A

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