C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049887 Nupl2-001 ENSMUSG00000048439 10090 + 5:24164963-24184013 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049887
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049887 1.313±0.72 0.803±0.31 2.182±0.02 2.057±0.90 1.240±0.32 1.472±0.30 0.969±0.21 1.050±0.33 1.750±0.57 0.970±0.18 1.264±0.35 1.464±0.60 1.523±0.67 6.873±1.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_00022N CIL_00022N_0002 CGP 5:24100590-24184013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258742 NUPL2-001 protein_coding Homo_sapiens 0 918
ENST00000410002 NUPL2-008 protein_coding Homo_sapiens 0 357
ENST00000413919 NUPL2-002 protein_coding Homo_sapiens 0 549
ENST00000437140 NUPL2-005 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000438012 NUPL2-003 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000477844 NUPL2-006 retained_intron Homo_sapiens 0 571
ENST00000485250 NUPL2-004 retained_intron Homo_sapiens 0 832
ENST00000486136 NUPL2-010 retained_intron Homo_sapiens 0 278
ENST00000487595 NUPL2-009 processed_transcript Homo_sapiens 0 483
ENST00000497500 NUPL2-007 retained_intron Homo_sapiens 0 361

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