C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000115101 Nupl2-002 ENSMUSG00000048439 10090 + 5:24165000-24182837 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000115101
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000115101 1.808±0.88 3.795±0.78 1.375±0.44 1.224±0.40 1.722±0.70 2.023±0.68 1.539±0.42 0.614±0.21 0.862±0.46 1.333±0.29 0.898±0.24 2.342±0.91 1.299±0.63 21.492±6.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_00022N CIL_00022N_0002 CGP 5:24100590-24184013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0046872 IEA metal ion binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258742 NUPL2-001 protein_coding Homo_sapiens 0 357
ENST00000410002 NUPL2-008 protein_coding Homo_sapiens 0 357
ENST00000413919 NUPL2-002 protein_coding Homo_sapiens 0 357
ENST00000438012 NUPL2-003 nonsense_mediated_decay Homo_sapiens 0 357
ENST00000485250 NUPL2-004 retained_intron Homo_sapiens 0 270
ENST00000487595 NUPL2-009 processed_transcript Homo_sapiens 0 357
ENST00000497500 NUPL2-007 retained_intron Homo_sapiens 0 359

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