C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heparan sulfate 6-O-sulfotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259241 HS6ST1-001 ENSG00000136720 9606 - 2:128265480-128318577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259241 6.294±0.00 8.244±0.00 1.477±0.00 15.994±13.75 4.909±3.84 6.015±4.66 5.768±5.21 15.902±12.82 8.821±7.96 4.163±3.15 7.246±3.82 16.214±8.24 16.318±3.29 13.694±3.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002WO CIL_0002WO_0002 CGP 2:128091200-128318577

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0001525 IEA angiogenesis
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0008146 TAS:IEA sulfotransferase activity
GO:0015012 IEA heparan sulfate proteoglycan biosynthetic process
GO:0015015 IEA heparan sulfate proteoglycan biosynthetic process, enzymatic modification
GO:0016021 IEA integral component of membrane
GO:0017095 IEA heparan sulfate 6-O-sulfotransferase activity
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0048286 IEA lung alveolus development
GO:0048666 IMP neuron development
GO:0060716 IEA labyrinthine layer blood vessel development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088174 Hs6st1-001 protein_coding Mus_musculus 0 1696
ENSMUST00000065904 Hs6st3-201 protein_coding Mus_musculus 0 479
ENSMUST00000114871 Hs6st2-002 protein_coding Mus_musculus 0 344
ENSDART00000002250 hs6st2-001 protein_coding Danio_rerio 0 294
ENSMUST00000142738 Hs6st2-003 retained_intron Mus_musculus 0 211
ENSMUST00000088172 Hs6st2-001 protein_coding Mus_musculus 0 211

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