C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mitochondrial ribosomal protein S18B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259873 MRPS18B-001 ENSG00000204568 9606 + 6:30617709-30626395 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000259873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000259873 19.337±0.00 25.375±0.00 3.677±0.00 13.861±8.60 12.237±10.50 10.777±8.23 23.003±19.35 30.711±21.99 21.363±17.99 13.609±9.83 37.349±25.26 24.024±11.32 33.636±6.24 14.764±6.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00090O CIL_00090O_0001 VISTA 6:30539989-31144784
CIL_0001FO CIL_0001FO_0002 CGP 6:30600400-30626395

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005739 IDA mitochondrion
GO:0005763 NAS mitochondrial small ribosomal subunit
GO:0005840 IEA ribosome
GO:0006412 NAS:IEA translation
GO:0030054 IDA cell junction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025305 Mrps18b-001 protein_coding Mus_musculus 0 669
ENSMUST00000173737 Mrps18b-006 retained_intron Mus_musculus 0 387
ENSMUST00000113782 Mrps18b-002 protein_coding Mus_musculus 0 387
ENSMUST00000118837 Gm13552-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000174807 Mrps18b-005 protein_coding Mus_musculus 0 361
ENSMUST00000174574 Mrps18b-007 retained_intron Mus_musculus 0 285
ENSMUST00000172642 Mrps18b-004 protein_coding Mus_musculus 0 285
ENSMUST00000174349 Mrps18b-003 protein_coding Mus_musculus 0 285
ENSMUST00000173792 Mrps18b-008 processed_transcript Mus_musculus 6e-22 110

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