C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein, large, P1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260379 RPLP1-001 ENSG00000137818 9606 + 15:69452784-69456194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260379 69.745±0.00 130.528±0.00 115.114±0.00 38.500±28.35 142.980±98.18 197.583±129.04 49.956±6.98 105.493±77.20 78.201±20.95 115.217±39.89 423.710±106.48 352.398±225.86 313.987±170.16 39.167±18.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA ribosome
GO:0005925 IDA focal adhesion
GO:0006412 NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS:IEA translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073722 Gm10073-201 protein_coding Mus_musculus 0 555
ENSMUST00000008036 Rplp1-201 protein_coding Mus_musculus 0 549
ENSMUST00000172206 Gm17511-201 protein_coding Mus_musculus 0 444
ENSMUST00000180255 Gm11942-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000118208 Gm13777-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000177803 Gm13249-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000179385 Gm13144-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000117496 Gm13035-001 processed_pseudogene Mus_musculus 0 361
ENSMUST00000118035 Gm13137-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000189517 Gm5244-002 processed_transcript Mus_musculus 0 353
ENSMUST00000118238 Gm13229-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000119875 Gm13163-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000120994 Gm13246-001 processed_pseudogene Mus_musculus 0 320
ENSMUST00000164001 Gm5244-001 transcribed_processed_pseudogene Mus_musculus 0 318
ENSMUST00000117047 Gm12165-001 processed_pseudogene Mus_musculus 0 313

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