C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11942
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180255 Gm11942-001 ENSMUSG00000094344 10090 + 4:32964888-32965232 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000180255
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180255 2.404±1.41 0.704±0.56 0.327±0.10 5.525±7.72 1.566±0.79 0.935±0.74 1.251±0.84 2.405±1.43 0.949±0.48 1.032±0.39 0.194±0.05 0.785±0.46 0.372±0.27 0.960±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00015N CIL_00015N_0002 CGP 4:32804035-33022180

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260379 RPLP1-001 protein_coding Homo_sapiens 0 438
ENST00000357790 RPLP1-002 protein_coding Homo_sapiens 0 252
ENST00000405359 AC016739.2-001 processed_pseudogene Homo_sapiens 0 433
ENST00000407767 RP3-406A7.3-001 transcribed_processed_pseudogene Homo_sapiens 0 200
ENST00000412004 RP5-1052M9.1-001 processed_pseudogene Homo_sapiens 3e-27 122
ENST00000437248 RP11-435F13.2-001 processed_pseudogene Homo_sapiens 0 327
ENST00000473923 RP11-54C4.1-001 transcribed_processed_pseudogene Homo_sapiens 0 342
ENST00000487304 RPLP1-003 retained_intron Homo_sapiens 0 254
ENST00000488122 RPLP1-004 retained_intron Homo_sapiens 0 346
ENST00000490423 RP11-395C3.1-001 processed_pseudogene Homo_sapiens 0 187
ENST00000518134 RP11-54C4.1-002 processed_transcript Homo_sapiens 0 342
ENST00000560274 RPLP1-006 protein_coding Homo_sapiens 2e-28 128

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