C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lipoic acid synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261434 LIAS-001 ENSG00000121897 9606 + 4:39459000-39477653 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000261434
Transcript ID Adrenal Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000261434 0.513±0.00 1.548±0.01 1.184±0.00 1.964±1.22 1.219±0.17 0.969±0.37 1.991±0.00 2.192±1.23 0.598±0.00 2.097±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653
CIL_000278 CIL_000278_0002 CGP 4:39459000-39528311

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IEA neural tube closure
GO:0003824 IEA catalytic activity
GO:0005739 ISS mitochondrion
GO:0006954 ISS inflammatory response
GO:0006979 ISS response to oxidative stress
GO:0009107 ISS:IEA lipoate biosynthetic process
GO:0009249 IEA protein lipoylation
GO:0016992 ISS:IEA lipoate synthase activity
GO:0032496 ISS response to lipopolysaccharide
GO:0046872 IEA metal ion binding
GO:0051536 IEA iron-sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031101 Lias-001 protein_coding Mus_musculus 0 1286
ENSMUST00000122026 Lias-003 protein_coding Mus_musculus 0 1133
ENSMUST00000126036 Lias-004 retained_intron Mus_musculus 0 470
ENSMUST00000139847 Lias-002 retained_intron Mus_musculus 0 422

Loading