C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lipoic acid synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031101 Lias-001 ENSMUSG00000029199 10090 + 5:65391497-65410693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031101
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031101 2.638±0.18 1.578±0.74 3.679±0.22 3.752±0.59 1.760±0.64 2.018±0.31 2.538±0.20 3.122±0.39 2.875±1.14 1.917±0.42 3.164±0.77 2.761±0.90 2.375±0.99 1.973±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0003 CGP 5:65388364-65410693
CIL_000278 CIL_000278_0003 CGP 5:65391497-65435946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0005739 IDA mitochondrion
GO:0006954 IMP inflammatory response
GO:0006979 IMP response to oxidative stress
GO:0009107 IGI lipoate biosynthetic process
GO:0009249 IEA protein lipoylation
GO:0016992 IGI lipoate synthase activity
GO:0032496 IMP response to lipopolysaccharide
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261434 LIAS-001 protein_coding Homo_sapiens 0 1286
ENST00000340169 LIAS-008 protein_coding Homo_sapiens 0 1038
ENST00000381846 LIAS-002 protein_coding Homo_sapiens 0 728
ENST00000424936 LIAS-004 retained_intron Homo_sapiens 0 470
ENST00000509519 LIAS-003 retained_intron Homo_sapiens 0 231
ENST00000513731 LIAS-006 protein_coding Homo_sapiens 0 566
ENST00000515061 LIAS-007 processed_transcript Homo_sapiens 0 721

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