C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263635 TANC1-001 ENSG00000115183 9606 + 2:158968671-159232659 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000263635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000263635 3.884±0.00 7.578±0.00 1.663±0.00 2.704±0.00 3.772±0.00 3.752±0.69 8.905±2.96 4.124±0.00 1.745±1.16 5.434±2.42 4.632±1.17 2.804±0.44 1.293±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083G CIL_00083G_0001 VISTA 2:158622805-159223829
CIL_0007X8 CIL_0007X8_0001 VISTA 2:158652559-159256392
CIL_0008PS CIL_0008PS_0001 VISTA 2:158729476-159332500
CIL_0005U4 CIL_0005U4_0001 CGP 2:158795317-159232659
CIL_0008P7 CIL_0008P7_0001 VISTA 2:158911416-159511996
CIL_0005U3 CIL_0005U3_0001 CGP 2:158968634-159286799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007520 IEA myoblast fusion
GO:0008542 IEA visual learning
GO:0030054 IEA cell junction
GO:0030425 IEA dendrite
GO:0043025 IEA neuronal cell body
GO:0043679 IEA axon terminus
GO:0045211 IEA postsynaptic membrane
GO:0097062 IEA dendritic spine maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037526 Tanc1-201 protein_coding Mus_musculus 0 6189
ENSMUST00000139863 Tanc1-011 protein_coding Mus_musculus 0 6152
ENSMUST00000112568 Tanc1-001 protein_coding Mus_musculus 0 6063
ENSMUST00000056900 Tanc1-005 retained_intron Mus_musculus 0 3644
ENSMUST00000147650 Tanc1-006 retained_intron Mus_musculus 0 1347
ENSMUST00000162857 Tanc1-012 retained_intron Mus_musculus 0 327
ENSMUST00000126271 Tanc1-008 processed_transcript Mus_musculus 0 320
ENSMUST00000136248 Tanc1-007 processed_transcript Mus_musculus 0 241

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