C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand of numb-protein X 1, E3 ubiquitin protein ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000263925 LNX1-001 ENSG00000072201 9606 - 4:53460456-53591616 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaENST00000263925
Transcript ID Placenta
ENST00000263925 12.572±2.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272
CIL_0007V9 CIL_0007V9_0001 VISTA 4:52895307-53499113
CIL_0001CL CIL_0001CL_0001 CGP 4:53377643-54295272
CIL_0001CM CIL_0001CM_0001 CGP 4:53459301-54064690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0030165 IEA PDZ domain binding
GO:0042787 IEA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0051260 IEA protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117388 Lnx1-006 protein_coding Mus_musculus 0 2276
ENSMUST00000087161 Lnx1-201 protein_coding Mus_musculus 0 2211
ENSMUST00000117525 Lnx1-004 protein_coding Mus_musculus 0 1901
ENSMUST00000113531 Lnx1-202 protein_coding Mus_musculus 0 1858
ENSMUST00000127396 Lnx1-002 nonsense_mediated_decay Mus_musculus 0 1858
ENSMUST00000039744 Lnx1-001 protein_coding Mus_musculus 0 1855
ENSMUST00000121690 Lnx1-003 protein_coding Mus_musculus 0 1480
ENSMUST00000154928 Lnx1-007 nonsense_mediated_decay Mus_musculus 0 955
ENSMUST00000153543 Lnx1-008 protein_coding Mus_musculus 0 566
ENSMUST00000140084 Lnx1-009 protein_coding Mus_musculus 0 409

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