C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5396
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121222 Gm5396-001 ENSMUSG00000084275 10090 - X:153112923-153113454 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverLungOvaryPlacentaTestisENSMUST00000121222
Transcript ID Bladder Brain Liver Lung Ovary Placenta Testis
ENSMUST00000121222 0.019±0.00 0.197±0.06 0.023±0.00 0.116±0.00 0.479±0.10 0.090±0.09 0.074±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 628
ENST00000264052 SP100-001 protein_coding Homo_sapiens 0 496
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 468
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 623
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 623
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 560
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 468
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 623
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 424
ENST00000403495 HMGB1P17-001 processed_pseudogene Homo_sapiens 0 281
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 623
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 401
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 503
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 364
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 529
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 372
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 556
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 1e-24 117
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 285
ENST00000502802 HMGB1P3-001 processed_pseudogene Homo_sapiens 0 496
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 571
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 614
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 9e-19 97
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 503

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