C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 21596
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178049 Gm21596-201 ENSMUSG00000096006 10090 - 2:113919247-113920562 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178049 0.489±0.25 0.182±0.06 0.461±0.21 4.160±4.98 0.453±0.22 0.370±0.16 0.288±0.12 0.399±0.15 5.561±11.42 0.620±0.16 0.167±0.05 1.415±1.07 0.620±0.85 0.269±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0002 VISTA 2:113391542-113992644
CIL_0008VH CIL_0008VH_0002 VISTA 2:113823388-114423882

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 870
ENST00000264052 SP100-001 protein_coding Homo_sapiens 0 889
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 907
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 1458
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 1687
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 730
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 782
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 1458
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 625
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 1458
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 593
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 710
ENST00000429856 HMGB1P9-001 processed_pseudogene Homo_sapiens 0 713
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 429
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 481
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 689
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 540
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 1188
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 601
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 652
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 244
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 440
ENST00000469112 FMO1-002 processed_transcript Homo_sapiens 3e-33 148
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 399
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 307
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 791
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 261
ENST00000559968 RP11-643G16.4-002 processed_transcript Homo_sapiens 0 867
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 861
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 291
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 725

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