C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member F (in filopodia)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267205 RHOF-001 ENSG00000139725 9606 - 12:121777754-121794262 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENST00000267205
Transcript ID Ovary Testis
ENST00000267205 0.850±0.00 4.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074R CIL_00074R_0002 CGP 12:121651118-121783001
CIL_0000F9 CIL_0000F9_0002 CGP 12:121712752-121803403
CIL_00006S CIL_00006S_0002 CGP 12:121777754-121832584

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 NAS:IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0005856 NAS cytoskeleton
GO:0005886 TAS plasma membrane
GO:0006184 NAS:IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007015 IDA actin filament organization
GO:0007165 IEA signal transduction
GO:0007264 IEA:TAS small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031401 Rhof-001 protein_coding Mus_musculus 0 780
ENSMUST00000160479 Rhof-003 nonsense_mediated_decay Mus_musculus 0 780
ENSMUST00000186469 Rhof-201 protein_coding Mus_musculus 0 776
ENSMUST00000162208 Rhof-002 processed_transcript Mus_musculus 0 285
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0.00005 55

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