C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: reticulon 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000267484 RTN1-001 ENSG00000139970 9606 - 14:59595977-59870966 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267484
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267484 1.585±0.00 0.140±0.00 21.548±0.00 2.039±0.00 0.103±0.04 0.287±0.00 0.762±0.00 0.607±0.00 0.405±0.00 2.176±0.00 0.560±0.00 1.071±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S5 CIL_0000S5_0001 CGP 14:59504539-59870966
CIL_0005ZY CIL_0005ZY_0002 CGP 14:59595976-60063559

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0030176 TAS integral component of endoplasmic reticulum membrane
GO:0030182 IEP neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078505 Rtn1-001 protein_coding Mus_musculus 0 2499
ENSMUST00000150156 Rtn1-002 processed_transcript Mus_musculus 0 878
ENSMUST00000021497 Rtn1-201 protein_coding Mus_musculus 0 876
ENSMUST00000137990 Rtn1-003 protein_coding Mus_musculus 0 865
ENSMUST00000144181 Rtn1-004 processed_transcript Mus_musculus 0 278

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