C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000273179 CTDSPL-001 ENSG00000144677 9606 + 3:37862174-37984469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000273179
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000273179 4.303±0.00 2.567±0.00 1.166±0.94 4.193±2.82 6.547±0.00 4.122±0.00 9.486±0.00 4.548±0.00 0.791±0.59 4.214±1.67 8.486±2.93 4.460±2.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VQ CIL_0005VQ_0001 CGP 3:37452115-37984469
CIL_0008CZ CIL_0008CZ_0001 VISTA 3:37464508-38067589
CIL_00099X CIL_00099X_0001 VISTA 3:37469210-38073013
CIL_0005AN CIL_0005AN_0001 CGP 3:37861960-38007188

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001933 IEA negative regulation of protein phosphorylation
GO:0003674 ND molecular_function
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0046872 IEA metal ion binding
GO:0070062 IDA extracellular vesicular exosome
GO:2000134 IEA negative regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000073109 Ctdspl-001 protein_coding Mus_musculus 0 1574
ENSMUST00000172464 Ctdspl-003 protein_coding Mus_musculus 0 765
ENSMUST00000174132 Ctdspl-002 retained_intron Mus_musculus 0 693
ENSMUST00000174841 Ctdspl-004 processed_transcript Mus_musculus 0 610

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