C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine receptor, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274576 GLRA1-001 ENSG00000145888 9606 - 5:151822513-151924842 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U9 CIL_0001U9_0001 CGP 5:151771045-151924842
CIL_0001UA CIL_0001UA_0001 CGP 5:151822513-152433368

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001964 IMP startle response
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IMP integral component of plasma membrane
GO:0006810 IEA transport
GO:0006811 IDA:IEA ion transport
GO:0006821 IDA chloride transport
GO:0006936 IMP muscle contraction
GO:0007218 IDA neuropeptide signaling pathway
GO:0016020 IEA membrane
GO:0016021 NAS:IEA integral component of membrane
GO:0016594 IDA glycine binding
GO:0016934 IDA extracellular-glycine-gated chloride channel activity
GO:0022824 IEA transmitter-gated ion channel activity
GO:0030054 IEA cell junction
GO:0030977 IDA taurine binding
GO:0034220 TAS ion transmembrane transport
GO:0034707 IEA chloride channel complex
GO:0042391 IMP regulation of membrane potential
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0051970 IMP negative regulation of transmission of nerve impulse
GO:0055085 TAS transmembrane transport
GO:1902476 IEA chloride transmembrane transport
GO:2000344 IMP positive regulation of acrosome reaction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102716 Glra1-002 protein_coding Mus_musculus 0 1941
ENSMUST00000075603 Glra1-003 protein_coding Mus_musculus 0 1779
ENSMUST00000108853 Glra1-001 protein_coding Mus_musculus 0 1561
ENSDART00000005499 glra1-201 protein_coding Danio_rerio 0 876
ENSDART00000066197 glra1-203 protein_coding Danio_rerio 0 821
ENSDART00000047680 glra1-202 protein_coding Danio_rerio 0 821
ENSDART00000136733 glra1-001 protein_coding Danio_rerio 0 821
ENSDART00000030509 glra4a-202 protein_coding Danio_rerio 0 693
ENSDART00000026194 glra4a-201 protein_coding Danio_rerio 0 693
ENSDART00000146445 glra4a-001 protein_coding Danio_rerio 0 693
ENSDART00000006474 glra4b-001 protein_coding Danio_rerio 0 675
ENSDART00000009777 GLRA3-201 protein_coding Danio_rerio 0 484
ENSDART00000131947 glra4a-002 processed_transcript Danio_rerio 0 322

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