C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine receptor, alpha 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108853 Glra1-001 ENSMUSG00000000263 10090 - 11:55514238-55607733 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyMuscleOvaryTestisENSMUST00000108853
Transcript ID Adipose Brain Breast Kidney Muscle Ovary Testis
ENSMUST00000108853 0.086±0.04 0.685±0.00 0.077±0.02 0.016±0.00 0.034±0.00 0.017±0.00 0.037±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U9 CIL_0001U9_0002 CGP 11:55469685-55608198
CIL_0001UA CIL_0001UA_0002 CGP 11:55514238-56041010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001508 IMP action potential
GO:0001964 IMP startle response
GO:0002087 IMP regulation of respiratory gaseous exchange by neurological system process
GO:0005622 IDA intracellular
GO:0007268 IMP synaptic transmission
GO:0007340 IMP acrosome reaction
GO:0007601 IMP visual perception
GO:0007628 IMP adult walking behavior
GO:0009897 IDA external side of plasma membrane
GO:0016020 IDA membrane
GO:0016594 IDA glycine binding
GO:0016934 IMP extracellular-glycine-gated chloride channel activity
GO:0022824 IEA transmitter-gated ion channel activity
GO:0030054 IEA cell junction
GO:0042391 IMP regulation of membrane potential
GO:0043576 IMP regulation of respiratory gaseous exchange
GO:0045211 IDA postsynaptic membrane
GO:0050884 IMP neuromuscular process controlling posture
GO:0050905 IMP neuromuscular process
GO:0060012 IMP synaptic transmission, glycinergic
GO:0060013 IMP righting reflex
GO:0060077 IDA inhibitory synapse
GO:0060080 IMP regulation of inhibitory postsynaptic membrane potential
GO:1902476 IMP chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000005499 glra1-201 protein_coding Danio_rerio 0 806
ENSDART00000066197 glra1-203 protein_coding Danio_rerio 0 806
ENSDART00000047680 glra1-202 protein_coding Danio_rerio 0 806
ENSDART00000136733 glra1-001 protein_coding Danio_rerio 0 806
ENSDART00000030509 glra4a-202 protein_coding Danio_rerio 0 669
ENSDART00000026194 glra4a-201 protein_coding Danio_rerio 0 669
ENSDART00000146445 glra4a-001 protein_coding Danio_rerio 0 669
ENSDART00000009777 GLRA3-201 protein_coding Danio_rerio 0 508
ENSDART00000131947 glra4a-002 processed_transcript Danio_rerio 0 374
ENST00000274576 GLRA1-001 protein_coding Homo_sapiens 0 1561
ENST00000372617 GLRA4-001 protein_coding Homo_sapiens 0 680
ENST00000455880 GLRA1-004 protein_coding Homo_sapiens 0 1467
ENST00000462581 GLRA1-002 nonsense_mediated_decay Homo_sapiens 0 1650
ENST00000471351 GLRA1-003 processed_transcript Homo_sapiens 0 987
ENST00000480725 GLRA4-004 retained_intron Homo_sapiens 0 586

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