C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine receptor, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000005499 glra1-201 ENSDARG00000012019 7955 + 14:26827181-26914777 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000005499
Transcript ID Brain Heart Liver Muscle
ENSDART00000005499 2.911±0.00 0.035±0.00 0.026±0.00 0.186±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005886 IEA plasma membrane
GO:0005887 IEA integral to plasma membrane
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006821 IEA chloride transport
GO:0007417 IMP central nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0016594 IEA glycine binding
GO:0016934 IEA extracellular-glycine-gated chloride channel activity
GO:0022824 IEA transmitter-gated ion channel activity
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0043200 IDA response to amino acid
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0045664 IMP regulation of neuron differentiation
GO:1902476 IDA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075603 Glra1-003 protein_coding Mus_musculus 0 769
ENSMUST00000102716 Glra1-002 protein_coding Mus_musculus 0 843
ENSMUST00000108853 Glra1-001 protein_coding Mus_musculus 0 806
ENST00000264428 GLRB-001 protein_coding Homo_sapiens 6e-25 121
ENST00000274576 GLRA1-001 protein_coding Homo_sapiens 0 876
ENST00000455880 GLRA1-004 protein_coding Homo_sapiens 0 795
ENST00000462581 GLRA1-002 nonsense_mediated_decay Homo_sapiens 0 817
ENST00000471351 GLRA1-003 processed_transcript Homo_sapiens 0 695
ENST00000506411 GLRB-003 nonsense_mediated_decay Homo_sapiens 1e-25 121
ENST00000509282 GLRB-002 protein_coding Homo_sapiens 3e-25 121
ENST00000515642 GLRB-004 nonsense_mediated_decay Homo_sapiens 1e-24 117
ENST00000541722 GLRB-201 protein_coding Homo_sapiens 5e-25 121

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